Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09070 219 / 4e-62 Protein of unknown function (DUF740) (.1) AT2G38070 181 / 7e-49 Protein of unknown function (DUF740) (.1) AT5G01170 142 / 6e-36 Protein of unknown function (DUF740) (.1) AT5G58930 89 / 3e-18 Protein of unknown function (DUF740) (.1) AT3G46990 54 / 4e-07 Protein of unknown function (DUF740) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035513 [exp] 785 / 0 AT3G09070 465 / 8e-155 Protein of unknown function (DUF740) (.1) Lus10040700 [exp] 95 / 3e-20 AT5G58930 221 / 2e-65 Protein of unknown function (DUF740) (.1) Lus10018206 [exp] 89 / 5e-18 AT5G58930 234 / 6e-70 Protein of unknown function (DUF740) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111400 [exp] 421 / 1e-138 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1) Potri.006G096600 [exp] 414 / 8e-136 AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1) Potri.001G248400 [exp] 149 / 3e-38 AT5G58930 287 / 4e-90 Protein of unknown function (DUF740) (.1) Potri.009G042200 [exp] 139 / 8e-35 AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [flax] [poplar] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Lus10027785 pacid=23156888 polypeptide=Lus10027785 locus=Lus10027785.g ID=Lus10027785.BGIv1.0 annot-version=v1.0 ATGAGAGACGGAAAGATTGAGAGAAAAGAAACAGAGGGCAGAGAGCTCCGCCGCTCCAAGTCATTCTCCGCCTCCAAGAACGAAGGGTTCTCCGGCGTGT TCGAGCCTCAGAGAAAGTCGTGCGACGTCAGGGGACGGAACACCCTCTGGCTTTTGTTCAACCAGGCCAATCCGACCGAAATCGACCAGCCGCAGCCACC CAGATTTTCCGCCTCCGGTTCGTTGGTTTTGAAACCGGACGGGTTCGAAGGGACGGAGAGTGATCAAGAGGAGGAGGAAGAAGAAGATAATGTCCGTGAA AATACGGACATTGTTGTTGACCCGCCGACTTTGACCGCGAGGAACTCAAACGCGAAGCCGATTGACGAAATCATCGAGGAAGAAGACGAACACGAAGAAG AAGAAGAAATTGCAATTGAACCGCCAGTAGAAGAAGAAGAGGAAAAGACGATGAAGGACCACTTAGATCTCGATTCTTCTTCCCAAACGAAGAAGAGGGT CAGCTTCTGGTCAGCGGCGTCGGTCTTCAGCAAGAAGCTACAGAAATGGAGGCAGAAGCAGAAGCTGAAGAAGCGGCGGAGCAACGGCGTCAGAAATGGG GGAATCTCCGTCTCGGGGACATTGCCGGTGGAGAAGCCAATCGGTAGGCAGTACAGAGAGACCCAGTCGGAAATCGCCGACTACGGTTTCGGCACGAGAT TCTGCGACACGGATCCGAGATTCTCGCTCGACATCGGGCGGATGTCCTTCGACGACCCTCGCTACTCCTTCGACGAGCCACGCGCCTCCTGGGACGGTTA CTTGATGGGAAGGACATTCCCGACGAGAGCCCCTCTGTTGCCCACCATGCTCTCCGTCGTCGAGGACGCTCCGGCGGTGATCAGATCCGACGCTCATATC CCCGTCGAACAACCTCCACCTCCTCCGCCGCCGCCGCCGCATGTGGCGGCGGCCATCCATTCCATCACCGAGGGCGAGGACCATGTGGCGGCCCCCATCC ATTCCATCACCGAGGACGAGTTCGTACCCGGTGGATGTGCTCAGACGAGGGACTACTACACGGATTCGTCATCCAGGAGGAGGAAGAGCCTGGATAGATC AAGCTCGATTCGAAGCACGGCCGCCGCGGTGGTGGCCGAGATTGACGAGCTGAAATCCGTCTCATCCAACTCCAAAGTGTCTCCGGCGACGGTGGAGTCG TCGTCAATAATCAACGGTCCGAAAGTAGATTACTTGAGGGAGTATTCACATTATTCAAACTCTCTCCGTGACGATTGCTCTGTCGAGACATTCGACAATG CGTCGATTGTTGGAGGAGGAGGAGGAGGAGATCGGAAGGAAAACAACGGCGGCGGGACGAAGAAGTCGAAGAGGTGGGGGAAAGGATGGAGCATTTGGGG GTTTATACACAGGCGAAGTGTGAATAAGGACGACGAGAGATCATCATACAGAGGGGTTGGTGGTAATGGAGTTGAGAGGTCGTTTTCAGAGACATGGCCG GATTTGAGAGGGGAAAGGATGATGAATGTGGGCAATGGAGGAGGAGGAGGAGGGAGGTTCAATCCTAATCTAATGAGGAGTAGCAGCAGTGTGAGTTGGA GGAATTCGAACGGATTCGGACCTTCGATTGGGTCGTTTGGGAGCGGGAGGAAGAGCAATGTGGAGACTTGCAGCAGTGGGAATGGATTTGGAGGAAGGAA GAAAAGAGACGAGTTCATGTTGGAGAGGAACAGAAGTGCAAGGTATTCACCAAGTAATAATAGTACCGTGGACAACAATGGTATGCTGAAATGGTACTTA GCTCCTCAAAGTGGTACCGGCCGGATCGCGGCGGCCAGTGCCACTGGAGGAGGAGGAGGATGGGGGAAGAGCAAAACCCATCAAGCACATTCCATAGCCA GGAGTGTATTGCGATTGTACTGA
AA sequence Show only first row Show all	>Lus10027785 pacid=23156888 polypeptide=Lus10027785 locus=Lus10027785.g ID=Lus10027785.BGIv1.0 annot-version=v1.0 MRDGKIERKETEGRELRRSKSFSASKNEGFSGVFEPQRKSCDVRGRNTLWLLFNQANPTEIDQPQPPRFSASGSLVLKPDGFEGTESDQEEEEEEDNVRE NTDIVVDPPTLTARNSNAKPIDEIIEEEDEHEEEEEIAIEPPVEEEEEKTMKDHLDLDSSSQTKKRVSFWSAASVFSKKLQKWRQKQKLKKRRSNGVRNG GISVSGTLPVEKPIGRQYRETQSEIADYGFGTRFCDTDPRFSLDIGRMSFDDPRYSFDEPRASWDGYLMGRTFPTRAPLLPTMLSVVEDAPAVIRSDAHI PVEQPPPPPPPPPHVAAAIHSITEGEDHVAAPIHSITEDEFVPGGCAQTRDYYTDSSSRRRKSLDRSSSIRSTAAAVVAEIDELKSVSSNSKVSPATVES SSIINGPKVDYLREYSHYSNSLRDDCSVETFDNASIVGGGGGGDRKENNGGGTKKSKRWGKGWSIWGFIHRRSVNKDDERSSYRGVGGNGVERSFSETWP DLRGERMMNVGNGGGGGGRFNPNLMRSSSSVSWRNSNGFGPSIGSFGSGRKSNVETCSSGNGFGGRKKRDEFMLERNRSARYSPSNNSTVDNNGMLKWYL APQSGTGRIAAASATGGGGGWGKSKTHQAHSIARSVLRLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	1.0	0.9541
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	1.7	0.9122
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	2.0	0.9064
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	2.0	0.9194
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	2.2	0.8946
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	3.3	0.8740
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	4.6	0.8910
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	5.5	0.8926
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	6.3	0.8888
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	7.1	0.8606

Compare expression of checked genes

Lus10027785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.