Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01530 223 / 2e-72 LHCB4.1 light harvesting complex photosystem II (.1) AT3G08940 209 / 5e-67 LHCB4.2 light harvesting complex photosystem II (.1.2) AT2G40100 167 / 7e-51 LHCB4.3 light harvesting complex photosystem II (.1.2) AT3G54890 123 / 4e-34 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT4G10340 95 / 4e-23 LHCB5 light harvesting complex of photosystem II 5 (.1) AT2G34420 94 / 5e-23 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT2G34430 94 / 6e-23 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT1G29920 94 / 7e-23 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 94 / 7e-23 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT1G29930 94 / 7e-23 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035512 [exp] 237 / 4e-78 AT3G08940 459 / 4e-165 light harvesting complex photosystem II (.1.2) Lus10028299 [exp] 174 / 2e-53 AT2G40100 412 / 7e-147 light harvesting complex photosystem II (.1.2) Lus10040191 [exp] 174 / 3e-53 AT2G40100 412 / 1e-146 light harvesting complex photosystem II (.1.2) Lus10037836 [exp] 169 / 3e-51 AT2G40100 399 / 2e-141 light harvesting complex photosystem II (.1.2) Lus10040391 [exp] 120 / 4e-33 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10023509 [exp] 120 / 5e-33 AT3G54890 367 / 3e-130 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10021730 [exp] 99 / 7e-25 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10042657 [exp] 96 / 2e-23 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10013778 [exp] 94 / 1e-22 AT4G10340 421 / 6e-150 light harvesting complex of photosystem II 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099500 [exp] 211 / 4e-68 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.016G115200 [exp] 209 / 3e-67 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.008G067300 [exp] 171 / 1e-52 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2) Potri.008G041000 [exp] 119 / 2e-32 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 112 / 5e-30 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.019G063101 [exp] 99 / 1e-24 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.002G189300 [exp] 92 / 4e-22 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239300 [exp] 91 / 9e-22 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239200 [exp] 91 / 9e-22 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.011G079500 [exp] 90 / 3e-21 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10027786 pacid=23157002 polypeptide=Lus10027786 locus=Lus10027786.g ID=Lus10027786.BGIv1.0 annot-version=v1.0 ATGGCCGCCACATCAGCAGCCGAAGCAGCCACGTCGTCCTTCATCAGCACACGCCGACCCAGAATGTCCGCTAAATCCGGGCGGGTTGAGGCTCGGTTCG GGTTCGGAGCCAAGAAAGCGGCGCCTAAGAAGAAGGCGGCCAAGCCAACTTCGGACCGCCCGCTTTGGTTCCCGGGTGCCCAGGCGCCCGAGTGGCTGGA CGGGACCCTGGTTGGCGACTACGGGTTTTCAGAGAGTGTGAGCTCATCCATGGAAGGTGGGCCATGTTGGCTACCCTCGGCGCTCTCACCGTCGAGTGGC TCACCGGCGTCACCTGGCAAGACGCCGGCAAGCTTATCTAACCCGACTCAAAATTACGGTACATGTAATAACCCTACATTAAGGCTAGTGGAATTGGTGG AAGGATCCTCGTACCTAGGACAGCCATTGCCGTTCTCGCTAACCTCCCTGATCTGGATCGAGGTGTTGGTGATCGGGTTCATCGAGTTTCAGAGGAACGC GGAGCTGGAGCCGGAGAAGAGGCTGTACCCGGGAGGGCCATTTGACCCCTTGGGACTGGCTGCGGACCCGGAGAAGAAGGAGAGACTTCAGCTGGCGGAG ATCAAGCACGCCCGGCTAGCGATGGTTGGGTTCCTAGGGTTCGCGGTTCAGGCCGCGGTTACGGGGAAGGGACCACTCAACAACTGGGCCACTCACTTGA GCGACCCACTCCACACCACCATCATCGACAACTTGTCCTAA
AA sequence Show only first row Show all	>Lus10027786 pacid=23157002 polypeptide=Lus10027786 locus=Lus10027786.g ID=Lus10027786.BGIv1.0 annot-version=v1.0 MAATSAAEAATSSFISTRRPRMSAKSGRVEARFGFGAKKAAPKKKAAKPTSDRPLWFPGAQAPEWLDGTLVGDYGFSESVSSSMEGGPCWLPSALSPSSG SPASPGKTPASLSNPTQNYGTCNNPTLRLVELVEGSSYLGQPLPFSLTSLIWIEVLVIGFIEFQRNAELEPEKRLYPGGPFDPLGLAADPEKKERLQLAE IKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	0	1
AT2G30570		PSBW	photosystem II reaction center...		Lus10033862 [exp]	2.2	0.9556
AT1G51400			Photosystem II 5 kD protein (....		Lus10030132 [exp]	2.8	0.9454
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10023320 [exp]	3.0	0.9458
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	3.2	0.9422
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10013310 [exp]	5.1	0.9519
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10042219 [exp]	7.9	0.9224
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	8.4	0.9143
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	8.5	0.9251
					Lus10025623 [exp]	10.6	0.9070
AT5G02160			unknown protein		Lus10024373 [exp]	11.2	0.9143

Compare expression of checked genes

Lus10027786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.