Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51880 87 / 7e-22 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 62 / 1e-12 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT1G20696 60 / 1e-11 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT2G17560 53 / 4e-09 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 44 / 9e-06 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G34450 42 / 4e-05 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035511 [exp] 157 / 1e-48 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 76 / 4e-17 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10016695 [exp] 75 / 4e-17 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035991 [exp] 71 / 4e-16 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10028298 [exp] 69 / 2e-14 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10013219 [exp] 62 / 1e-12 AT1G20693 165 / 2e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 52 / 4e-09 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 52 / 9e-09 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10030738 [exp] 52 / 1e-08 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189900 [exp] 83 / 3e-20 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 80 / 3e-19 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G101400 [exp] 57 / 1e-10 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 57 / 2e-10 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 55 / 1e-09 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10027787 pacid=23157017 polypeptide=Lus10027787 locus=Lus10027787.g ID=Lus10027787.BGIv1.0 annot-version=v1.0 ATGAAGGGTAAGGGTAAGGGGGCTGCTAAAGTTACGAAGGAAGCTCTGAAACCTGCTGATGACAGAAAAGTTGGCAAGCGGAAAGCTGCGCCTGCAGCTG CGGTAGATAAAGGTAACAAACCGAGAGCAAGGAACGCGAAGAAGGCGAAGAAAGATCCAAACAAGCCAAAGAGGCCTCCAACTGCTTTTTTCGTCTTCCT GGAGGAGTTCAGGAAGACGTTCAAGAAGGAAAACCCGAATGCGAATTCTGTTTCCGCGGAGAAGGCTCCGTACGAAGCCAAAGCTGGGAAAAAGAAGGAC GAGTATGGGGAACTCATGAATGCTTACAACAACAAGCAGGAGAGCGATGATGGTCATGGAGACAAAGAAGACTCAGACAGGTCGAAGTCCGAGGTAAATG ATGATGATGACGAGGATGTTAATGATGCTCCTGTTGCCGAGGAAGCGCATAAGGAGAAGGAAGAAGTGGAAGAAGTGGAAGAAGAAGAAGAAGAGGACGA TGAAGAGGAAGAAGAGGATGATGATGATGAAGACTAG
AA sequence Show only first row Show all	>Lus10027787 pacid=23157017 polypeptide=Lus10027787 locus=Lus10027787.g ID=Lus10027787.BGIv1.0 annot-version=v1.0 MKGKGKGAAKVTKEALKPADDRKVGKRKAAPAAAVDKGNKPRARNAKKAKKDPNKPKRPPTAFFVFLEEFRKTFKKENPNANSVSAEKAPYEAKAGKKKD EYGELMNAYNNKQESDDGHGDKEDSDRSKSEVNDDDDEDVNDAPVAEEAHKEKEEVEEVEEEEEEDDEEEEEDDDDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	1.0	0.9449
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	3.7	0.9392
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	5.7	0.9332
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	8.1	0.9177
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	10.2	0.9218
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	10.4	0.9145
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	10.7	0.9133
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	12.8	0.9293
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10036560 [exp]	13.0	0.9071
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	13.4	0.9202

Compare expression of checked genes

Lus10027787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.