Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01510 481 / 1e-166 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G31190 101 / 6e-23 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT3G45890 100 / 4e-22 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G49820 90 / 4e-19 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 84 / 3e-17 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G23470 72 / 3e-13 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035510 [exp] 896 / 0 AT5G01510 511 / 3e-178 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 101 / 2e-22 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 100 / 4e-22 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 99 / 1e-21 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 97 / 4e-21 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 96 / 9e-21 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10003558 [exp] 89 / 6e-19 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 74 / 7e-14 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 71 / 1e-12 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099700 [exp] 576 / 0 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 92 / 1e-19 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 92 / 1e-19 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 86 / 1e-17 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.004G229500 [exp] 83 / 9e-17 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.007G035300 [exp] 72 / 4e-13 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 53 / 1e-07 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10027788 pacid=23156938 polypeptide=Lus10027788 locus=Lus10027788.g ID=Lus10027788.BGIv1.0 annot-version=v1.0 ATGACTCATTCCCTGAGGCTCTCGTTTCCTAACTGTGTATTCGAATCGTCGTCGACGACGAGCAGCAGCCGGAGTAGGAGAGCTCGTCGTTTCCGATTTC CCTGTGCGCAGTCCAATCCTCAGGATTCCGAAGATGAGAGCGATAGATGCCGGAAGAAGCAGTCTATTTTAGTGGAGAGGTACAGCAATGGAGCTGTCAA AAGATACATTTTGGATGATGCATTAGGAGTAAGAAGCTCTTTCGAGGAAGATCTGGTTACTAATTATGAACTCGGAAGCTCGGTTGAGGATGAGAGGAAA GAACCGGCATGGCCTGTTCCTCGATTCGTCACGGATTTTGTCCTGCCTGCTGGATATCCAGGATCTGTTTCAGACGACTATTTGCACTACATGTTATTAC AGTTCCCGACGAATGTCACTGGATGGATCTGTCACGCGTTGGTCACATCTAGTCTTCTTAAGGCATTTCTGCTTGTGCTTATTACCCTCAGCTACTACTA TACTTGGCGGCTGCAGGCTGTTGGTGTTGGCTACTCTACAGGGACGGCTGCAGCTGCTACAGCTGCTGCAATCAGATGGGTGTCTAAGGATGGAATTGGA GCTTTGGGTGGAAGATTTGGCAATCTTTTTGATGATGATCCGAAACAATGGCGCATGTATGCAGATTTCATCGGTAGTGCTGGGAGCATCTTTGACCTTA CCACTCAACTGTACCCAGGCTACTTCCTGCCATTAGCCTCTCTTGGAAATCTGACTAAGGCTGTAGCAAGGGGACTCAAAGATCCTTCGTCCCGTGTGAT CCAAAACCATTTTGCTGCTGCCGGGAATCTAGGGGAAGTAGCTGCAAAGGAAGAAGTTTGGGAAGTAGGAGCTCAATTGCTTGGACTTGCTTTAGGCATA CTGATCCTGGATACACCAGGGCTGGTGAAATCTTTTCCTGCCTTGACATTGACGTGGACCAGCACTCGTCTTCTACATCTGTGGTTACGTTATGAATCCT TGTCAGTCCTACAATTCGACACGATAAACCTCAAGCGAGCTCGACTGCTGGTAAATTCACATATTATCCATTCTCGTGTTCAAGGATGTCTGGATTGTAA TAAGGAAGAAAACATCTTGTTATGGGAAAGATTCACCAAGCCCAGAATCACTTTTGGTGTTCCCTTGGGAGAGATGATTGGTGGCAAGAAATCCATTTCC GATGTAAAATCGCTTATGAAAGTGTATGAAGAGGAGAAATATCTGCTCATGGTGAACAGGGAAACCAGAGATTTCGAGGTCTTTATTTCGTTCAAGGTGG GAGCTACGAGCATCTCAGTATTACGAAGCGTGTGGCAAGCATACTGGCTGCACCTCAACTGGCAACATTCTCTTGATGTTTTCCGCCAGCTTGCTACTTC CCAGAACGAGATGCAGAGCAACTTTGAGGATTTCATTCAGCAGTTGGCTCAAGCCGGATGGGACACGAATCAAATCAACCTAAAAGTCCCTGTCGGATTA TTGATCGACGAATCATGCTTCAGAGTTTCGAAAGAGTGA
AA sequence Show only first row Show all	>Lus10027788 pacid=23156938 polypeptide=Lus10027788 locus=Lus10027788.g ID=Lus10027788.BGIv1.0 annot-version=v1.0 MTHSLRLSFPNCVFESSSTTSSSRSRRARRFRFPCAQSNPQDSEDESDRCRKKQSILVERYSNGAVKRYILDDALGVRSSFEEDLVTNYELGSSVEDERK EPAWPVPRFVTDFVLPAGYPGSVSDDYLHYMLLQFPTNVTGWICHALVTSSLLKAFLLVLITLSYYYTWRLQAVGVGYSTGTAAAATAAAIRWVSKDGIG ALGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLTTQLYPGYFLPLASLGNLTKAVARGLKDPSSRVIQNHFAAAGNLGEVAAKEEVWEVGAQLLGLALGI LILDTPGLVKSFPALTLTWTSTRLLHLWLRYESLSVLQFDTINLKRARLLVNSHIIHSRVQGCLDCNKEENILLWERFTKPRITFGVPLGEMIGGKKSIS DVKSLMKVYEEEKYLLMVNRETRDFEVFISFKVGATSISVLRSVWQAYWLHLNWQHSLDVFRQLATSQNEMQSNFEDFIQQLAQAGWDTNQINLKVPVGL LIDESCFRVSKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	0	1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	1.0	0.8881
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	2.2	0.8796
AT3G10350			P-loop containing nucleoside t...		Lus10037982 [exp]	2.4	0.8699
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	2.4	0.8878
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	6.0	0.8799
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	6.5	0.8697
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	6.7	0.8870
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	7.2	0.8372
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10002745 [exp]	8.1	0.8309
AT5G46560			unknown protein		Lus10011046 [exp]	8.5	0.8639

Compare expression of checked genes

Lus10027788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.