Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51870 434 / 1e-152 Mitochondrial substrate carrier family protein (.1) AT5G01500 426 / 9e-149 TAAC thylakoid ATP/ADP carrier (.1) AT4G01100 122 / 7e-32 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 120 / 3e-31 Mitochondrial substrate carrier family protein (.1) AT4G26180 119 / 1e-30 Mitochondrial substrate carrier family protein (.1) AT3G53940 115 / 6e-29 Mitochondrial substrate carrier family protein (.1) AT3G55640 111 / 9e-28 Mitochondrial substrate carrier family protein (.1) AT4G32400 111 / 1e-27 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT1G14560 108 / 5e-27 Mitochondrial substrate carrier family protein (.1) AT5G51050 98 / 2e-22 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035509 [exp] 566 / 0 AT3G51870 504 / 3e-179 Mitochondrial substrate carrier family protein (.1) Lus10004820 [exp] 439 / 5e-154 AT3G51870 462 / 5e-163 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 132 / 3e-35 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 131 / 5e-35 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 130 / 7e-35 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 125 / 7e-33 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 125 / 1e-32 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 121 / 2e-31 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 121 / 3e-31 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099800 [exp] 467 / 2e-165 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.016G115400 [exp] 461 / 7e-163 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.008G060900 [exp] 131 / 4e-35 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 129 / 4e-34 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 128 / 6e-34 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 127 / 8e-34 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 123 / 6e-32 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 122 / 2e-31 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 121 / 2e-31 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 121 / 2e-31 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10027789 pacid=23156991 polypeptide=Lus10027789 locus=Lus10027789.g ID=Lus10027789.BGIv1.0 annot-version=v1.0 ATGATAGAAGAAAGAGCCGTTCTATCTTTCCGAAGCCTGCCGGCGCTGAAGACTACGCAGTACAGTATTCCGACAGAAGATGAAGACGCCGAGCCTCAAT GGAAGACCGCTCGGCTCAGCTGCAGCAGCAGTAAGGGCAATTCCGGCGGCGTCTCCTTTGCGTCCCTGTCAATGGTGGAGAAGGCGGAGGGATTGGAATT CGCGCCTACCACATCTCAGCTACTGAAGAATCCGCTGGCTATGCTTGCTTGCGTTCCTCGAGGCGCCGCGATTTTCATTGCTGGCGCTGCCGCCGGTGCC GCCGCGAAGACCGTGACGGCTCCTCTTGATCGCGTCAAGATTCTTATGCAGACTCACGGTATAAGAGTTGGGCAAGAGAGCACTAAGAAGGCGATTGGTT TCATTGAGGCTCTAGCATTGATTGGTAAAGAAGAAGGAATCAAAGGCTATTGGAAAGGGAACCTTCCTCAGGTTATTAGGATTATACCTTATAGCGCAGT CCAGCTCTTCAGCTACGAGTTTTACAAGGTGACGTACCCTTTAGATGTACTAAGGTTGCGGTTAGCAGTTGATACAGGACACAGGACCATGATACAGATT GCTTTAACTATGCTGCGAGAGGAAGGAGCAGCATCGTTTTACTACGGCCTCGGGCCTTCTCTTGTCAGCATCGCTCCATATATTGCTGTGAACTTCTGCA TGTTCGACTTAGTGAAGAAATCCTTGCCCGAGAAGTATAAACAGACAGCTCAGTCATCTGTAATTACAGCTGTGGTTTCTGCTGCTGTTGCAACTATCAC ATGCTATCCACTGGATACAGTGAGACGACAGATGCAAATGCGGGGTGCGCCTTATAAATCGTTCTTCCATGCCTTTCCAGGGATCGTGGAACGAGATGGG TTCATCGGCTTGTACAGAGGGTTTCTGCCCAACGTATTGAAGAACTTACCCAATAGCAGCATAAGGCTTTCGACGTTCGACATAGTGAAACGGCTGATCG CAGCGGGCGAGAAAGAGCTGCAGCAAATGGTGAATGGGAACCGTGCACAACATAGCTAG
AA sequence Show only first row Show all	>Lus10027789 pacid=23156991 polypeptide=Lus10027789 locus=Lus10027789.g ID=Lus10027789.BGIv1.0 annot-version=v1.0 MIEERAVLSFRSLPALKTTQYSIPTEDEDAEPQWKTARLSCSSSKGNSGGVSFASLSMVEKAEGLEFAPTTSQLLKNPLAMLACVPRGAAIFIAGAAAGA AAKTVTAPLDRVKILMQTHGIRVGQESTKKAIGFIEALALIGKEEGIKGYWKGNLPQVIRIIPYSAVQLFSYEFYKVTYPLDVLRLRLAVDTGHRTMIQI ALTMLREEGAASFYYGLGPSLVSIAPYIAVNFCMFDLVKKSLPEKYKQTAQSSVITAVVSAAVATITCYPLDTVRRQMQMRGAPYKSFFHAFPGIVERDG FIGLYRGFLPNVLKNLPNSSIRLSTFDIVKRLIAAGEKELQQMVNGNRAQHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	0	1
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	1.0	0.9641
AT1G57750		MAH1, CYP96A15	MID-CHAIN ALKANE HYDROXYLASE 1...		Lus10002523 [exp]	1.7	0.9512
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	2.8	0.9601
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	4.5	0.9435
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10011784 [exp]	6.6	0.9007
AT4G21770			Pseudouridine synthase family ...		Lus10018352 [exp]	7.1	0.8982
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	8.0	0.9466
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	8.5	0.9371
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	11.0	0.9367
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	15.0	0.9361

Compare expression of checked genes

Lus10027789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.