Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) AT3G11210 186 / 3e-57 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45920 116 / 2e-30 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 106 / 7e-27 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035508 [exp] 229 / 2e-72 ND / Lus10035506 [exp] 225 / 3e-70 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 192 / 6e-59 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10040197 [exp] 186 / 2e-56 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 175 / 1e-52 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10022686 [exp] 117 / 4e-30 ND / Lus10027675 [exp] 107 / 4e-27 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 103 / 3e-26 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000525 [exp] 103 / 1e-25 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115800 [exp] 206 / 5e-65 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 202 / 1e-63 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 194 / 2e-60 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 193 / 7e-60 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 191 / 9e-59 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 187 / 3e-57 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 110 / 2e-28 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G053800 [exp] 104 / 4e-26 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 102 / 2e-25 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10027790 pacid=23157045 polypeptide=Lus10027790 locus=Lus10027790.g ID=Lus10027790.BGIv1.0 annot-version=v1.0 ATGTCGGTCGGCCTTGGGCCATGCGGCATGCAACTTATGTTTGGATATGGTACGAAACCTCTCGACTCAGTTACTTCTTATCGTGCTAACCAAAGGTCTA TAGAGATGCTCCCACGTCTCAAGCTCCCAATTCCTCATTATTCTCGAACCAAGTACCAATGGTACGAAATAGACAAGAAAGAGGAGAAACACTTCGTGGC AGGTTTAGACGGATGGCTACTCATCGCGGACCCATGTAAAACTAGCGCTAGCGGTCCCCAATGTCTCCAACTCCAGCTCTTCAACCCAATCACGAGCGCC ACCATCGCCCTTCCTGACCGCCCTCCCACACTAGCCAAGCTACTTTCCTCAAGGGACGACATCATCCAAGCCGTCCTCTCCTCTTCTCCTGACAATGTCC ACGTAGACTGCAACGTCATCGTCCTCTTGGAATTGAGCCCCTACCTAGCATGGTGCAAGGTGTTAGGAGAAGGACGCGGTTGGAAGTTCTTGAGCAACGA AATATTCGGAACCCGGCCAGAGGAGGATGCAGCTACACAGCCTGCATTGGTCATAGTCTATTTTGGAGGAAACGATGCATGCCATCCGGACTTCAATGCA GCTCATGTACCTCTAGCTGAGTACTATGAGAACATGAAGAACATTGCTGCTCATCTCAAGGGCCTATCCGAAACAACCAGGGTCATCTTTCTCACTCCGC CTCCTGTCAACGAGAAGCTCATCGCTGAATCTTTTCGCCGAGTTATAGGCCGAACGAACGCTGCTATCTGGATGTATGCAGATGCTTGTTTGAAAGTGTG TGCAGAAATGAAGATCAAAGCTATTGATCTTTGGGATGTATTCCAACAACGGGACGATTGGCTGTCCACTTGCTTCACAGATGGGATTCATCTGTCAGCT GAAGGGAGCGAGATGGTGGCGAATGAGATCCTGAAGGTGCTGAAAGAATCAGAGTGGGAACCAAGCTTGTATTGGAAGACGATGCCTTTCGAATTCCCGG GATTGGTAGACCACGATCCCCACGGATACCATAGTCACTTCTTGAGGTTGAAATCGCGGATTTAG
AA sequence Show only first row Show all	>Lus10027790 pacid=23157045 polypeptide=Lus10027790 locus=Lus10027790.g ID=Lus10027790.BGIv1.0 annot-version=v1.0 MSVGLGPCGMQLMFGYGTKPLDSVTSYRANQRSIEMLPRLKLPIPHYSRTKYQWYEIDKKEEKHFVAGLDGWLLIADPCKTSASGPQCLQLQLFNPITSA TIALPDRPPTLAKLLSSRDDIIQAVLSSSPDNVHVDCNVIVLLELSPYLAWCKVLGEGRGWKFLSNEIFGTRPEEDAATQPALVIVYFGGNDACHPDFNA AHVPLAEYYENMKNIAAHLKGLSETTRVIFLTPPPVNEKLIAESFRRVIGRTNAAIWMYADACLKVCAEMKIKAIDLWDVFQQRDDWLSTCFTDGIHLSA EGSEMVANEILKVLKESEWEPSLYWKTMPFEFPGLVDHDPHGYHSHFLRLKSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38180			SGNH hydrolase-type esterase s...		Lus10027790 [exp]	0	1
					Lus10020449 [exp]	7.3	0.6398
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10025388 [exp]	7.5	0.6479
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	7.5	0.7289
					Lus10007128 [exp]	17.3	0.6929
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030890 [exp]	23.2	0.6556
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	26.8	0.6874
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	31.9	0.6706
AT1G05430			unknown protein		Lus10006108 [exp]	33.4	0.6616
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	35.2	0.6728
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10005103 [exp]	35.2	0.6269

Compare expression of checked genes

Lus10027790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.