Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01590 89 / 9e-23 CRR3 chlororespiratory reduction 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110100 [exp] 98 / 3e-26 AT2G01590 95 / 9e-25 chlororespiratory reduction 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027792 pacid=23157086 polypeptide=Lus10027792 locus=Lus10027792.g ID=Lus10027792.BGIv1.0 annot-version=v1.0 ATGGCCAAATCACTATTGATCTTGGCATCTTCCCTTCCTAATAATTCCAACCCAATCCCTCATCCTTCTCCCAAACCTCATCTAATAAAAATACAACCCA CCGCCACTACTATTCCTACTCCGAAAAAGAAGAATAATGTCCAGCAGAAACTCGAGATACTGAGGCTCGAGCGCGCAATCGGCGCCGGAAGCTACCGCGA CGCCGAGCCCCCAGCCTCGGTGGAGGACGCCCTCAGTTCCGGGATTGCCGGATTGTGGTCGGAATCCGATGACGACGCCGTTAATCAATTTGAGGGATCT GTGGAGAAGAAGATAAGAGAGACGGGAGAATGGGTTGCGCACACTACAGAGACTCAGTTTCGGATATCGGAGAAACAAGGGCTCGAGTTTTTGTTCAAGT GGGCTCTCCCGATTTCGCTGCTGGCGATGATGGTGGCTGTCGGAGTTGTCAAGCTTCCCTTTCTCTCGCCCTTCCTTGATGAGTTCATCCTCTGA
AA sequence Show only first row Show all	>Lus10027792 pacid=23157086 polypeptide=Lus10027792 locus=Lus10027792.g ID=Lus10027792.BGIv1.0 annot-version=v1.0 MAKSLLILASSLPNNSNPIPHPSPKPHLIKIQPTATTIPTPKKKNNVQQKLEILRLERAIGAGSYRDAEPPASVEDALSSGIAGLWSESDDDAVNQFEGS VEKKIRETGEWVAHTTETQFRISEKQGLEFLFKWALPISLLAMMVAVGVVKLPFLSPFLDEFIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	0	1
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	1.4	0.9242
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	2.2	0.9330
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	3.5	0.9088
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	4.9	0.9077
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	6.0	0.9131
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	6.3	0.9047
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	8.5	0.8915
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	8.8	0.8984
AT4G28940			Phosphorylase superfamily prot...		Lus10023668 [exp]	9.2	0.8809
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	10.2	0.8955

Compare expression of checked genes

Lus10027792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.