Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01460 863 / 0 LMBR1-like membrane protein (.1) AT3G08930 858 / 0 LMBR1-like membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035505 [exp] 943 / 0 AT5G01460 917 / 0.0 LMBR1-like membrane protein (.1) Lus10004814 [exp] 793 / 0 AT5G01460 797 / 0.0 LMBR1-like membrane protein (.1) Lus10002488 [exp] 305 / 2e-100 AT5G01460 286 / 2e-93 LMBR1-like membrane protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116200 [exp] 853 / 0 AT5G01460 848 / 0.0 LMBR1-like membrane protein (.1) Potri.006G100200 [exp] 848 / 0 AT5G01460 825 / 0.0 LMBR1-like membrane protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [flax] [poplar] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Lus10027794 pacid=23157034 polypeptide=Lus10027794 locus=Lus10027794.g ID=Lus10027794.BGIv1.0 annot-version=v1.0 ATGGGCGATTTCAATCTCGCCCTGGTAATCGTCGCCATAGTGGTGTGCGTCATCGTCTTCCTCTTCAATGTCTACCTCCTCGTCAATTACCAGCACCCGG ACGACAAGAACCAAGCCTACTTCCCCAAATTCGTCGTCGTTTTCGGCCTCTCCGTCGCCGTCATCTCCATACTGATGCTGCCGGCCGACGTGGCGAACCG GCAGGCCTGTCGCCACGCGATATACAACGGCGCCTGCAATCTCACTCTGCCGATGAAGGATCTCTGGATCGCCGTCTACATCGTCGATGCTTTGCTTGTG TTCTTCATCATCCCTTTCGCCATGTTCTACTACGAAGGGGACCAGGACAAGACCATTGGCAAGCGAATTAAGAGCGCACTTTGTTGGGTGATAACTACAG CCATTGTCTGCGCTCTTCTGCTTGGAATCTTATACGGGCTAGTTGGAAAGGTTGATTTCACTGTTAGGCATCTCTCCTCGACCACGACAAACTTTCCAAC TTCTTGGAGTTTCTCTATGAGTCAACCATGTGTTGGAAATAATGCACGCCAGTGCTCAGCATATCTTGCCAATGCTACTTCAGAGAAGACATGGACTATG CAAACTACATTCCCTGAATATGTTGTTGCACTTGCTACAATAGCTGGATCTGTGCTTTTCTCGATATTTGGTGGAGTTGGTATTGCGAGTTTACCCCTGG GACTTATTTTCTCATTCCTCCGGCGACCAAAGGCTGTTATCACTCGCTCACAGTACATCAAGGAAGCAACAGAACTCGGTAAAAAAGCCAGAGAATTGAA GAAGGCAGCTGATTCGCTACGTCAGGAAGAGAAAAATGGTGCTAAGGGGAGAAAATGGCGTAAAAATGTAAAAGCAGTCGAAAAGGAATTGCTTCAGTTG GAAGAAGATGTAAACTTACTGGAAGAGATGTATCCTCAAGGAGAAAAGGCTGAGACTACTTGGGCTCTTACTGTACTTGGTTATTTGGCAAAACTTGTGT TGGGGTCCTTAGGATTGATTGTTTCAGTGGCTTGGATTGTTCATATTATCATATATCTGTTGATTGATCCTCCTCTTTCTCCTCTACTCAATGAGGTTTT TATCAAGTTGGATGATGTGTGGGGTCTTCTTGGTACTGCAGCATTTGCTTTCTTCTGCTTTTACCTTCTCCTTGCTGTGGTAGCTGGTGCAACGATGCTG GGCCTGAAAATAGTTTTCATCACGATTCATCCCATGAAGTGGGGTGCAACTCTCATGAACTCCTTCCTTTTCAATGTGGGACTCATTCTCCTGTGCTCGA TTAGTGTGATCCAGTTTTGTGCCACGGCATTTGGCTATTATGCACAAGCAACAGCTGCTCAAGAAATTTTTGGTCACACATTGCAGTCTCTTCGCGGGAT TAAATATCTGTACAAGTACAATGTGTTCCAAATTGCTTTCATCGTTCTTGCGGGGTTGACTTTCATATATTACGCTGCCTTCGGATGGAAACGGAAGAAA CCATCCGGCCGGTTCCAACTCTCGACCTAG
AA sequence Show only first row Show all	>Lus10027794 pacid=23157034 polypeptide=Lus10027794 locus=Lus10027794.g ID=Lus10027794.BGIv1.0 annot-version=v1.0 MGDFNLALVIVAIVVCVIVFLFNVYLLVNYQHPDDKNQAYFPKFVVVFGLSVAVISILMLPADVANRQACRHAIYNGACNLTLPMKDLWIAVYIVDALLV FFIIPFAMFYYEGDQDKTIGKRIKSALCWVITTAIVCALLLGILYGLVGKVDFTVRHLSSTTTNFPTSWSFSMSQPCVGNNARQCSAYLANATSEKTWTM QTTFPEYVVALATIAGSVLFSIFGGVGIASLPLGLIFSFLRRPKAVITRSQYIKEATELGKKARELKKAADSLRQEEKNGAKGRKWRKNVKAVEKELLQL EEDVNLLEEMYPQGEKAETTWALTVLGYLAKLVLGSLGLIVSVAWIVHIIIYLLIDPPLSPLLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVVAGATML GLKIVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIVLAGLTFIYYAAFGWKRKK PSGRFQLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	1.0	0.9165
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	1.7	0.9019
AT2G26680			unknown protein		Lus10043275 [exp]	2.4	0.9078
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	2.8	0.8989
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	3.2	0.8846
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	3.5	0.8845
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	4.2	0.8824
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	4.9	0.8841
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	5.9	0.8843
AT3G49720			unknown protein		Lus10039648 [exp]	6.0	0.8683

Compare expression of checked genes

Lus10027794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.