Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22290 566 / 0 Endoplasmic reticulum vesicle transporter protein (.1) AT1G36050 226 / 6e-71 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 219 / 4e-68 Endoplasmic reticulum vesicle transporter protein (.1.2) AT4G27080 86 / 3e-18 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 82 / 6e-17 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 82 / 8e-17 Thioredoxin protein with domain of unknown function (DUF1692) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035503 [exp] 564 / 0 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 498 / 6e-178 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 484 / 2e-172 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036158 [exp] 239 / 2e-75 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036449 [exp] 223 / 3e-69 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 133 / 3e-35 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10043062 [exp] 79 / 9e-16 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10041121 [exp] 76 / 3e-15 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10040029 [exp] 76 / 8e-15 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G023900 [exp] 589 / 0 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.016G022800 [exp] 585 / 0 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.001G206100 [exp] 243 / 9e-78 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.005G168800 [exp] 236 / 6e-75 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 234 / 3e-74 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 227 / 4e-71 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.011G135500 [exp] 85 / 6e-18 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 82 / 6e-17 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10027795 pacid=23156961 polypeptide=Lus10027795 locus=Lus10027795.g ID=Lus10027795.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAACAGGCTATAAAGAGCCTGGATGCTTTCCCTCGTGCAGAAGAACACCTGCTGCAGAAAACACGTTCTGGAGCTCTTGTTTCGATTATTG GGCTTGTGATAATGGCTACATTGTTTCTGCATGAGCTCTCTTACTACCTCCAAACGTATAAAGTTCATCAGATGTCCGTAGACGTGACACGCGGGCAAAC ACTCCCGATCGATGTAAACATCACATTTCCTTCCTTACCTTGTGATGTATTAAGCGTAGATGCGATTGACATGTCTGGAAAACATGAAGTGGATCTTGAT ACAAGTATATGGAAACTTCGCCTGAACAGTCATGGACAGATCATTGGCACTGAATATTTGACAGACCTCGTGGAGAAGGAACACAGTCACAATCATGATG ATAAAGATCATCAGGATAATCTTGACCAACAACTTCACATGCAAGGCTTTGATGAAGAGGCTGAAAACATGATAAAGAAGATGAAGCAAGCCTTAACAAA TGGAGAAGGATGCCGGATCTATGGTACCTTAGATGTTCAACGTGTTTCTGGAAACTTCCACATTTCAGTTCATGGGTTGAACATTTTCGTTGCACAGATG ATTTTTGGAGGATCTAAGCATGTTAACGTGACTCACATCGTTAATAATCTATCATTTGGGCCGAATTACCCTGGTATTCACAATCCTCTTGATGGGACAG AGAGGATTCTACACGATACAAGTGGAATATTTAAATACTTTATCAAGATTGTTCCAACGGAGTACAGATACATCTCTAAGAAAGTTGTGCCAACTAATCA ATTCTCAGTTACCGAATACTTCTCACCTATCAAAGACTTTGACAGGTCATGGCCAGCTGTTTACTTTCTGTACGATTTCTCACCTATCACGGTTACAATC AAGGAAGAAAAGCGCCGTTTCCTCCATTTCATCACTCGGCTTTGCGCCGTTTTAGGGGGTACATTTGCTTTAACAGGAATCCTTGATAGGTGGATGTTCA GGATTGTGGAATCAGTGACTAAATCAAACACTCGAACTGTGCTGCGATGA
AA sequence Show only first row Show all	>Lus10027795 pacid=23156961 polypeptide=Lus10027795 locus=Lus10027795.g ID=Lus10027795.BGIv1.0 annot-version=v1.0 MGVKQAIKSLDAFPRAEEHLLQKTRSGALVSIIGLVIMATLFLHELSYYLQTYKVHQMSVDVTRGQTLPIDVNITFPSLPCDVLSVDAIDMSGKHEVDLD TSIWKLRLNSHGQIIGTEYLTDLVEKEHSHNHDDKDHQDNLDQQLHMQGFDEEAENMIKKMKQALTNGEGCRIYGTLDVQRVSGNFHISVHGLNIFVAQM IFGGSKHVNVTHIVNNLSFGPNYPGIHNPLDGTERILHDTSGIFKYFIKIVPTEYRYISKKVVPTNQFSVTEYFSPIKDFDRSWPAVYFLYDFSPITVTI KEEKRRFLHFITRLCAVLGGTFALTGILDRWMFRIVESVTKSNTRTVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	1.4	0.9219
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	3.2	0.8933
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	4.2	0.9020
AT1G12650			unknown protein		Lus10017837 [exp]	5.5	0.8817
					Lus10011277 [exp]	9.6	0.8582
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	12.5	0.8990
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	13.4	0.8488
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10009488 [exp]	13.8	0.8249
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	14.8	0.8437
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	15.4	0.9018

Compare expression of checked genes

Lus10027795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.