Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51700 117 / 3e-33 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT3G45610 107 / 1e-28 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G66940 105 / 3e-28 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT3G50410 106 / 4e-28 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT3G21270 104 / 6e-28 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT3G61850 103 / 8e-27 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT5G60200 102 / 1e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G07640 102 / 2e-26 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G46590 102 / 4e-26 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT1G64620 100 / 4e-25 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035504 [exp] 248 / 5e-85 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10042114 [exp] 97 / 5e-26 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10015425 [exp] 101 / 6e-26 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10010113 [exp] 100 / 2e-25 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10012619 [exp] 100 / 3e-25 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10034652 [exp] 99 / 4e-25 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 98 / 9e-25 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10029767 [exp] 98 / 1e-24 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10014001 [exp] 98 / 1e-24 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034200 [exp] 146 / 5e-44 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.005G131600 [exp] 111 / 3e-30 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.007G036400 [exp] 108 / 4e-29 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.005G134200 [exp] 107 / 6e-28 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 106 / 1e-27 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.002G174300 [exp] 103 / 8e-27 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G081300 [exp] 102 / 3e-26 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.014G100900 [exp] 101 / 3e-26 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G077100 [exp] 101 / 5e-26 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G048300 [exp] 100 / 2e-25 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10027797 pacid=23156900 polypeptide=Lus10027797 locus=Lus10027797.g ID=Lus10027797.BGIv1.0 annot-version=v1.0 ATGCAAGATCCGGCTTCGGAATTCCCGATGATTAACCAGCAGCTGGCGCCGCCGTTCCCGGAGCAAGAGCAGCTCAACTGTCCTCGCTGCGACTCTTCCA ACACGAAATTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGATTCTTCTGCAAGGACTGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCAGAAA CATCCCCGTCGGCGGCGGCGGCGGAGGAGGAACTCGCAAGAACGCCAAACGATCTTCCAATTCCAACCAGAAACGCGCCAACCCGGATCCTATCCCGGAT TCCTCTCCCAGTGTCACTCGCCGGCTGGTTTCTGAACCTACATCGCCGCCTTCGTCTTCTTCAGTTCCCTTGGGAGCGGATCAGGACCCGACCCGGTTGT ACGGGCCGGAGCCAGGTCGAGATACGGGTTTGGATTCGGAGCTGTCACAATTTCCCCATCAGATCTGGTTTCGAAAAAGTGAGATGCAATGGAAGCATCT GGAACTGGAAGAACCACAACAGATTCGAAAGGAGCCTGCTGCTGGTGACGCTACTGGATTTCATCTGTGGCCATCTTCACCAAACCGGTAA
AA sequence Show only first row Show all	>Lus10027797 pacid=23156900 polypeptide=Lus10027797 locus=Lus10027797.g ID=Lus10027797.BGIv1.0 annot-version=v1.0 MQDPASEFPMINQQLAPPFPEQEQLNCPRCDSSNTKFCYYNNYNLSQPRFFCKDCRRYWTKGGALRNIPVGGGGGGGTRKNAKRSSNSNQKRANPDPIPD SSPSVTRRLVSEPTSPPSSSSVPLGADQDPTRLYGPEPGRDTGLDSELSQFPHQIWFRKSEMQWKHLELEEPQQIRKEPAAGDATGFHLWPSSPNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	0	1
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	4.0	0.8681
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042678 [exp]	4.5	0.8364
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	4.6	0.8779
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	8.0	0.8380
AT2G19270			unknown protein		Lus10020014 [exp]	11.6	0.7702
AT1G36980			unknown protein		Lus10037355 [exp]	12.7	0.8393
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	14.7	0.8292
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	18.5	0.8266
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	21.2	0.7983
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	22.4	0.8075

Compare expression of checked genes

Lus10027797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.