Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 312 / 3e-103 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G42250 273 / 7e-88 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT3G20100 263 / 3e-84 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1) AT3G20090 259 / 5e-84 CYP705A18 "cytochrome P450, family 705, subfamily A, polypeptide 18", cytochrome P450, family 705, subfamily A, polypeptide 18 (.1) AT4G15350 261 / 2e-83 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT5G47990 255 / 6e-81 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT5G07990 255 / 7e-81 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G20960 252 / 8e-81 CYP705A33 "cytochrome P450, family 705, subfamily A, polypeptide 33", cytochrome P450, family 705, subfamily A, polypeptide 33 (.1) AT1G50560 254 / 9e-81 CYP705A25 "cytochrome P450, family 705, subfamily A, polypeptide 25", cytochrome P450, family 705, subfamily A, polypeptide 25 (.1) AT3G20950 249 / 1e-78 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035502 [exp] 556 / 0 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 311 / 2e-102 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 310 / 3e-102 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10023827 [exp] 258 / 7e-82 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10013150 [exp] 252 / 8e-80 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 248 / 3e-78 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 247 / 1e-77 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021158 [exp] 240 / 5e-75 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10028881 [exp] 234 / 3e-73 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049800 [exp] 433 / 1e-150 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 377 / 2e-128 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G052600 [exp] 313 / 1e-103 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.005G037100 [exp] 313 / 2e-103 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 313 / 2e-103 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 298 / 1e-97 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G190800 [exp] 286 / 5e-93 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G057900 [exp] 271 / 3e-87 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.013G073300 [exp] 257 / 1e-81 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049900 [exp] 246 / 1e-81 AT5G06900 217 / 9e-69 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027798 pacid=23156974 polypeptide=Lus10027798 locus=Lus10027798.g ID=Lus10027798.BGIv1.0 annot-version=v1.0 ATGGCGATGGGGGCGAGATGCTCCGGCGACGGCGGCGGGGAGGCGGAGGAGGTGAGGGAGGTGATTCGGGAGACGGCGGAGCTGACGGGGAAATTCAATT TGGCGGATTTTGTGTGGTTCTGTAAAGGAATGGATCTTCAGGGGTTTGGGAAGAGGATGAAGGTTGTGAGGGATAAATTTGATTCGATGATGGAGAGGAT CATTAACGAGCATGAGGAAGAAAGGAAGAAGAAGAAGAATAACAACAACAATGGTGGTTCAGAGGAGGACGATGACCAAGTGAAGGATTTGCTTGACGTG CTGCTGGATATTTCTGAGGATCAAAGTTCAGAAATCAGATTGAGCCGTGAGAATATCAAGGCTTTCATCCTTGATATATTTGCGGCGGGAACAGACACGT CAGCGATCACCACTGAATGGGCGTTGGCAGAGCTAATCAACCACCCGAAGATCTTAACAAAAGCACAACACGAGATCGACTCGGTAGTGGGGAAATCGAG AATGGTAAGAGAATCTGACATTCCAAACCTTCCTTACCTCCAAGCCATGGTGAAAGAGACGTTGAGGCTCCACCCGACGGCGCCACTAATTGTGCGAGAA TCTTCCGAGGACTGTGATGTCCAGGACTACAACATACCGGCTAGGACCAGGCTGTTCGTGAACGTCTGGGCCATCAGTCGCGATCCAAATTATTGGGACG ATCCGCTCGAATTCAAGCCCGAGAGGTTTGTCGACGGGAAGGGGTCGCAGGTCGAAGTGAGGGGGCAGCATTTCGAGATGCTTCCATTCGGAAGCGGGAG GAGAGGGTGTCCTGGGACTACGTTGGCTCTTCAGATGGTGCAGACTATGTTGGCTGTGATGGTTCAGTGTTTTGAGTGGAAAGTTGATGGAGATGTTGTT GATATGGAAGAAGGAATTGGGCTTACTCTGCCTAAGGCTAACCCCTTGGTTTGTGTCCCTATGGCTAGGCTCCATCCCTTTCCAACCAATGGATTGGATA CTTAA
AA sequence Show only first row Show all	>Lus10027798 pacid=23156974 polypeptide=Lus10027798 locus=Lus10027798.g ID=Lus10027798.BGIv1.0 annot-version=v1.0 MAMGARCSGDGGGEAEEVREVIRETAELTGKFNLADFVWFCKGMDLQGFGKRMKVVRDKFDSMMERIINEHEEERKKKKNNNNNGGSEEDDDQVKDLLDV LLDISEDQSSEIRLSRENIKAFILDIFAAGTDTSAITTEWALAELINHPKILTKAQHEIDSVVGKSRMVRESDIPNLPYLQAMVKETLRLHPTAPLIVRE SSEDCDVQDYNIPARTRLFVNVWAISRDPNYWDDPLEFKPERFVDGKGSQVEVRGQHFEMLPFGSGRRGCPGTTLALQMVQTMLAVMVQCFEWKVDGDVV DMEEGIGLTLPKANPLVCVPMARLHPFPTNGLDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027798 [exp]	0	1
AT4G09990			Protein of unknown function (D...		Lus10002954 [exp]	4.9	0.7751
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	6.4	0.7877
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10025453 [exp]	58.3	0.7093
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	70.4	0.6872
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	72.1	0.6718
					Lus10005523 [exp]	106.7	0.6930
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	136.6	0.6743

Compare expression of checked genes

Lus10027798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.