Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12150 538 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023826 [exp] 603 / 0 AT3G12150 577 / 0.0 unknown protein Lus10035501 [exp] 474 / 4e-166 AT3G12150 333 / 3e-111 unknown protein Lus10021026 [exp] 380 / 8e-132 AT3G12150 392 / 4e-137 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049700 [exp] 566 / 0 AT3G12150 615 / 0.0 unknown protein Potri.006G058400 [exp] 566 / 0 AT3G12150 623 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF09752 [flax] [poplar] DUF2048 Abhydrolase domain containing 18
Representative CDS sequence Show only first row Show all	>Lus10027799 pacid=23156998 polypeptide=Lus10027799 locus=Lus10027799.g ID=Lus10027799.BGIv1.0 annot-version=v1.0 ATGGTGTCTGTCAACATTGGAATGCTGCATTATGTGTTGGATCACATCTATGGAGCGGTAATGCACAGGAGCAAGATGAGCACTCCATTCTTCTCCAAAG GATGGGGTGGCCAAAAGCTTGCCCTCTTGGAAAGAATGGTGAAAGATTTCTTCCCTGAAGTTGAAGGACAACAAAACTGGCCTCCCAGTGTGGTTCAGCC TAATTGGAGGACTATTTGGGAGAGCAAGACTGCTTGTTTAAAGGAAGGAGTGTTTATGACTCCCTGTGATGAGGAGATTGTCAGTGCATTGCCCCCCGAG AGCCGAACTGCTCGAGTTGCTTTCCTTGCTCCGAAATCGGGGCCCAGGGAAAGGATGGCTTGTGTCGTTCATCTTGCTGGCACCGGAGATCACACCTATG AGCGTAGGTTGCGCCTTGCTGCACCACTGCTGAAGGACAACATTGCAACCATGGTATTGGAAAGCCCTTTCTATGGGAAAAGGCGCCCGATGATGCAGCA GGGTGCCAAACTCTTATGTGTTAGTGACTTGCTTCTATTGGGTAAAGCAACTATTGAGGAAGCCCGTAGTCTCTTACACTGGTTAGACTCCGAAGCAGGT TTTGGCAAGTTAGGCATCTGTGGCCTTAGCATGGGTAAGAACCAAATTAAGAACCATATAATGCCTACTCGGATATCTCCAGGATCTCCTGAATTAGGTT CTTACAAGTTCTCGTTTCATTTAGGTGGCGTTCATGCTGCGATGGTTGGATCGTTGCACCCAACACCTGTTGCGACTCTCCCTTTCCTTTCCCCACACTC TGCCGTGGTCGCATTCTGTGAAGGTATTCTACAACATGGCACTGCTTGGGAGGCTCTGAGAGCTGATCTCGCGGAGCAAGCAGCTGCAATGACCCTCGAA CAGGTGCGAGAACGGATGCGCACCGTGCTCTCTCTCACCGATGTCACCCGTTTTCCGGCCCCAAAGAGTCCGGAGGCGGTTATTTTCGTCGCTGCAACTG ATGATGGTTACGTCCCAAACTATTCGGTTTTGGAGCTTCAAAAGGCTTGGCCTGGGTCAGAGGTCAGGTGGGTGAAGGGAGGCCATGTTTCGTCGTTCCT TCTCCACAACAGCGAGTTTCGAAGAGCGGTTAAAGACGGCCTGGATAGATTAGAATGGAAACAACCTGCATTGTGA
AA sequence Show only first row Show all	>Lus10027799 pacid=23156998 polypeptide=Lus10027799 locus=Lus10027799.g ID=Lus10027799.BGIv1.0 annot-version=v1.0 MVSVNIGMLHYVLDHIYGAVMHRSKMSTPFFSKGWGGQKLALLERMVKDFFPEVEGQQNWPPSVVQPNWRTIWESKTACLKEGVFMTPCDEEIVSALPPE SRTARVAFLAPKSGPRERMACVVHLAGTGDHTYERRLRLAAPLLKDNIATMVLESPFYGKRRPMMQQGAKLLCVSDLLLLGKATIEEARSLLHWLDSEAG FGKLGICGLSMGKNQIKNHIMPTRISPGSPELGSYKFSFHLGGVHAAMVGSLHPTPVATLPFLSPHSAVVAFCEGILQHGTAWEALRADLAEQAAAMTLE QVRERMRTVLSLTDVTRFPAPKSPEAVIFVAATDDGYVPNYSVLELQKAWPGSEVRWVKGGHVSSFLLHNSEFRRAVKDGLDRLEWKQPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12150			unknown protein		Lus10027799 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	5.3	0.7951
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	5.5	0.7926
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	12.6	0.7760
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	14.1	0.7730
AT4G24830			arginosuccinate synthase famil...		Lus10013207 [exp]	14.7	0.7836
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	16.9	0.7729
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	23.1	0.7918
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	23.6	0.7619
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006912 [exp]	28.2	0.7567
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	28.5	0.7826

Compare expression of checked genes

Lus10027799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.