Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32060 196 / 8e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT1G15930 190 / 4e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021027 [exp] 231 / 2e-79 AT2G32060 192 / 4e-64 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10035501 [exp] 240 / 2e-78 AT3G12150 333 / 3e-111 unknown protein Lus10023825 [exp] 197 / 8e-65 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G056200 [exp] 228 / 5e-78 AT2G32060 201 / 9e-68 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.005G206300 [exp] 223 / 3e-76 AT2G32060 201 / 2e-67 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.001G046600 [exp] 215 / 3e-73 AT2G32060 194 / 8e-65 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.003G181200 [exp] 214 / 5e-73 AT2G32060 188 / 1e-62 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10027800 pacid=23157049 polypeptide=Lus10027800 locus=Lus10027800.g ID=Lus10027800.BGIv1.0 annot-version=v1.0 ATGTCGGGTGAAGAAGTTGCCGTCCAACAGCCTGAGGCTCCTCCGGCCGCAGCCCCTGCTCCTGCTCTCGGTGAGCCAATGGATTTGGAGACGGCATTGC AACTCGTGCTGAGGAAGTCACTTGCTCATGGCGGTCTCACTAAGGGACTTCATGAGGCTGCAAAAGTGATTGAGAAGCATGCTGCTCAGCTTTGCGTATT GGCAGAGGACTGCAACCAAGCAGACTATGTCAAGTTGGTGAAGGCTCTCTGTGCTGACCACAACGTCAGCTTGATGACTGTTCCCAGTGCCAAGACCCTT GGTGAATGGGCTGGTCTGTGCAAGATCGATTCAGAGGGAAAGGCCAGGAAGGTGGTTGGATGCTCCTGTGTTGTTGTGAAGGATTTTGGTGAGGAAAGTG AAGGGCTAAACATTGTTCAAGAGCATTTGAAATCTCTATAG
AA sequence Show only first row Show all	>Lus10027800 pacid=23157049 polypeptide=Lus10027800 locus=Lus10027800.g ID=Lus10027800.BGIv1.0 annot-version=v1.0 MSGEEVAVQQPEAPPAAAPAPALGEPMDLETALQLVLRKSLAHGGLTKGLHEAAKVIEKHAAQLCVLAEDCNQADYVKLVKALCADHNVSLMTVPSAKTL GEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGLNIVQEHLKSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	0	1
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	1.7	0.9789
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	3.2	0.9653
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	3.5	0.9767
AT4G29410			Ribosomal L28e protein family ...		Lus10012914 [exp]	4.0	0.9527
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	4.2	0.9498
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	4.2	0.9649
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	4.2	0.9693
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	7.7	0.9663
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10020499 [exp]	7.7	0.9480
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	7.7	0.9608

Compare expression of checked genes

Lus10027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.