Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59440 304 / 1e-105 ATTMPK.2, ATTMPK.1, ZEU1 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035500 [exp] 411 / 9e-146 AT5G59440 345 / 1e-118 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334900 [exp] 323 / 6e-113 AT5G59440 313 / 3e-108 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02223 [flax] [poplar] Thymidylate_kin Thymidylate kinase
Representative CDS sequence Show only first row Show all	>Lus10027801 pacid=23157072 polypeptide=Lus10027801 locus=Lus10027801.g ID=Lus10027801.BGIv1.0 annot-version=v1.0 ATGGAGAGTGATGGTATAAATATCAGCAAGGGAAGTGATCCTAGAGGAGCTTTGATAGTTCTAGAAGGATTGGATCGGAGCGGGAAGACTTCACAGTCTG CTAGATTGTTCACTTACTTGGAAGGCGCAGGACATTCTGCCGAACTGTGGCGATTCCCTGATAGGACGACTAGTGTTGGGCAGATGATTTCTGCTTATCT TTTGAATGAATCTCAGCTGGATGATCACACTATCCATCTTCTTTTCAGTGCCAATCGATGGGAGAAGAGGTCATTGATGGAAGCTAAATTGAAGAGCGGA ACCACTCTGATTGTAGACCGTTACTCTTATTCTGGTGTGGCATTCTCGTCAGCTAAGGGACTCGATCTTGCGTGGTGTAAGACTCCTGAATTTGGGTTGC CAGCTCCAGATCTGGTTCTGTACCTCGACATACCACCTGAGAAAGCTGCAGAGAGAGGGGGCTATGGAGGTGAACGATACGAGCAGCTTGAATTTCAAAA GAAGGTTGCCGAATGCTATCGTGCCATCCGTGATTCTTCTTGGCAGACCATCGATGCGTGTCGGCCAATCGAGGAGATTGAGAAGGAGCTGCAGGGCATT GTGCTGGACAGTGTTGCTGAATGCAAAAAGGGGAAATCCATTTCCCACCTCTGGTCAAGTTAA
AA sequence Show only first row Show all	>Lus10027801 pacid=23157072 polypeptide=Lus10027801 locus=Lus10027801.g ID=Lus10027801.BGIv1.0 annot-version=v1.0 MESDGINISKGSDPRGALIVLEGLDRSGKTSQSARLFTYLEGAGHSAELWRFPDRTTSVGQMISAYLLNESQLDDHTIHLLFSANRWEKRSLMEAKLKSG TTLIVDRYSYSGVAFSSAKGLDLAWCKTPEFGLPAPDLVLYLDIPPEKAAERGGYGGERYEQLEFQKKVAECYRAIRDSSWQTIDACRPIEEIEKELQGI VLDSVAECKKGKSISHLWSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10027801 [exp]	0	1
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	3.5	0.8943
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	4.2	0.8739
					Lus10011007 [exp]	8.0	0.8688
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	8.9	0.8627
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	9.2	0.8860
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	10.6	0.8660
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	12.7	0.8637
AT1G77750			Ribosomal protein S13/S18 fami...		Lus10035785 [exp]	14.0	0.8538
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Lus10018227 [exp]	15.0	0.8344
AT3G02220			unknown protein		Lus10043249 [exp]	15.5	0.8490

Compare expression of checked genes

Lus10027801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.