Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06839 208 / 1e-66 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G06960 175 / 8e-55 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT3G12250 172 / 8e-54 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G68640 176 / 9e-54 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06950 172 / 1e-53 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G08320 164 / 4e-50 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT1G77920 150 / 6e-45 bZIP bZIP transcription factor family protein (.1) AT1G22070 141 / 5e-41 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G10030 140 / 5e-41 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 132 / 1e-38 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035499 [exp] 276 / 4e-94 AT5G06839 377 / 1e-129 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 241 / 2e-78 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 192 / 3e-61 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 189 / 3e-60 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 184 / 3e-58 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10020610 [exp] 173 / 5e-52 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10004876 [exp] 172 / 2e-51 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10041475 [exp] 170 / 3e-51 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10043387 [exp] 162 / 2e-48 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058800 [exp] 234 / 2e-75 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 221 / 7e-71 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G036500 [exp] 186 / 1e-57 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 184 / 7e-57 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 184 / 9e-57 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 184 / 1e-56 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 182 / 2e-56 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.009G164300 [exp] 174 / 2e-52 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 173 / 3e-52 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 146 / 4e-43 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027802 pacid=23156978 polypeptide=Lus10027802 locus=Lus10027802.g ID=Lus10027802.BGIv1.0 annot-version=v1.0 ATGTACGTGGACAACTGCTTGGCCCACTACGACGTCGTTATGACTCTCAAAGGGATGGCGGCCAAAGCGGACGTCTTCCATTTGGTGTCCGGAATGTGGA AGACGCCAGCCGAGCGTTGCTTCATTTGGATCGGCGGCTTCCGTCCTTCCGATCTCATCAAGGTAATAGTGAGCCAGATAGAGCCACTAACGGAGCAGCA AATCCTTGGGGTATGCGGATTGCAGCAGTCGACCCAGGAAGCCGAGGAAGCCCTATCTCAAGGGCTTGAAGCGCTCAACCAGTCGATTTCAGAGACGATA GCTTCAGACTCGTTGATCAACTCCCCTCCAAAGAACATGGCCAACTACATGGGTCAGATGGCCTTGGCCATCAACAAGCTCTCTGCCATCGAAGGCTTCG TACGACAGAATATTGAGAGGACTCATCTCATTAATTTGAATTGTTGGGAGAGGTACATAGGTTCACAATGA
AA sequence Show only first row Show all	>Lus10027802 pacid=23156978 polypeptide=Lus10027802 locus=Lus10027802.g ID=Lus10027802.BGIv1.0 annot-version=v1.0 MYVDNCLAHYDVVMTLKGMAAKADVFHLVSGMWKTPAERCFIWIGGFRPSDLIKVIVSQIEPLTEQQILGVCGLQQSTQEAEEALSQGLEALNQSISETI ASDSLINSPPKNMANYMGQMALAINKLSAIEGFVRQNIERTHLINLNCWERYIGSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10027802 [exp]	0	1
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	6.7	0.8968
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	9.2	0.9009
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	10.1	0.9006
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	12.4	0.8992
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	19.1	0.8727
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	25.5	0.8969
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	25.9	0.8905
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	29.2	0.8832
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	31.8	0.8920
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	33.7	0.8743

Compare expression of checked genes

Lus10027802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.