Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35610 869 / 0 XEG113 xyloglucanase 113 (.1) AT1G70630 79 / 3e-15 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 46 / 6e-05 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005034 [exp] 995 / 0 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10036860 [exp] 74 / 3e-14 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 72 / 7e-13 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 54 / 3e-07 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 52 / 1e-06 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 51 / 2e-06 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 50 / 5e-06 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 45 / 0.0001 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041975 [exp] 44 / 0.0002 AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235800 [exp] 908 / 0 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.008G186800 [exp] 71 / 1e-12 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.009G113300 [exp] 57 / 2e-08 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 57 / 3e-08 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 53 / 3e-07 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G046100 [exp] 50 / 5e-06 AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G051600 [exp] 48 / 2e-05 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10027804 pacid=23157069 polypeptide=Lus10027804 locus=Lus10027804.g ID=Lus10027804.BGIv1.0 annot-version=v1.0 ATGATCGGCGGAGGCGGCGGCGATGGCGGTGGGGGATTTTTGTTGAGATGGAGGAATGCATACAACGAATGGGCCAACACCAAGCCATTATTCCTTTCGA TCTACGCCACAGTCGTCCTCGGAATCGTCTTCTCCTCCTTTTACGTATTTACAGCCATTCATTCAGCTCCTAGCTCCGCCTCCGCCGCCGGTTCCACTGC CTGGCTCTCTGCCCCTACGTCACCTTCTCTTCCGTCTCTCCGAATGTTTCTTCAGGGAATTGTTTCTTCTGAATTTTTGGGGTCTGGTTCTTCGAGCACA AAGCCTATATGGGAAGTTCCACCCCAAGATTCCAAGATGCCACCTTTGGAGACCTTTAGACTGACAGAAGAGCTGGTGCGGCAGAGAGCGAAGGACAATG TCATCATAGTGACGTTTGGTAACTATGCATTTATGGATTTCATCCTTACTTGGGTTAAGCATTTGACGGACTTGGAGATCTCCAATCTTCTTGTTGGTGC TATGGATACCAAGCTGTTGGAAGCCTTGTACTGGCAAGGTGTTCCTGTGTTTGATATGGGCAGTCACATGAGCACTGTGGATGTTGGCTGGGGCTCACCA ACTTTTCATAAAATGGGGAGAGAAAAAGTTATTCTCATAGATGCAGTCCTTCCTTTTGGCGTTGAACTACTGATGTGTGACACAGATATGGTCTGGTTGA AGAACCCACTTCCATACCTGGCTCGATATCCAGAGGCAGATGTCTTAACATCAAGTGACCAAGTTGTCCCAACAGTCACTGACGACAGGCTGGAAATCTG GCAACAAGTTGGTGCTGCTTTCAATATAGGAATTTTCCACTGGAGACCAACAGCGTCTGCGATGAAACTGGCAAAAGAATGGAAAGAGTTGCTTCTGGCT GATGACAAGATATGGGATCAGAATGGATTCAATGATATCGTACGCAAGCAGTTAGGGCCATCAGTTAATGACGATGATGGCCTTGCATATGCTTTTGATG GAAGTCTGAAGCTTGGAATTTTGCCTGCCAGTATATTTTGCAGTGGACATACGTACTTTGTCCAGGCCATGCATCTGCAGCTTAGGTTAGAGCCATATGC AGTGCATACCACATTTCAATATGCTGGTACTGAAGGCAAGCGTCACCGATTACGAGAAGCCATGGCATTTTATGATCCCGCGGTCTATTATGATGCTCCA GGTGGTTTCTTGTCGTTTAAACCATCCATTCCAAAGAATTTGCTACTGGAAGGAGAGCATAATCTCGAGTCTCACTTTGCCCTTGTTAATTTCCAAATAA AACAAATAAGGACTGCACTCGCAATAGCCACCTTGTTAAATCGCACCCTGGTTATGCCCCCATTGTGGTGCAGGTTGGATAGGCTATGGTTTGCTCATCC TGGAATTCTGGAAGGGACCCTGACTAAACAACCTTTTATCTGCCCTTTGGATCATGTGTTCGAGGTCAATGTCATGTTGAAAGAGCTCCCCGAAGAGGAG TTTGGCCCTGGCATCAATATCAGAGAGTCCTCTTTCCTTGACAATCCCTCAATGCCTAAAAAAGTCAAGGAGTCATGGCTTGATGTTCAAATTTGTCAAG AAGGCAGTAAAGGTTGCAACGTTTCCAGCACCAGACCAGGAACAGTCAGATTCCCAAGACGAAGCAATGAAGAAACGAGCCGGGAAGACAAATTCCGGAA GCGTGTGAAGCGATACGTGGGCATATGGTGCTGTGTGGACAGTCATACTCCTGGGCATATATATTACGACATGTACTGGGACGAGAAGCCTGGTTGGAAG CCGATCCCACCGCAGTTGCCAGAAGACGATCACCCGAATTGGTAA
AA sequence Show only first row Show all	>Lus10027804 pacid=23157069 polypeptide=Lus10027804 locus=Lus10027804.g ID=Lus10027804.BGIv1.0 annot-version=v1.0 MIGGGGGDGGGGFLLRWRNAYNEWANTKPLFLSIYATVVLGIVFSSFYVFTAIHSAPSSASAAGSTAWLSAPTSPSLPSLRMFLQGIVSSEFLGSGSSST KPIWEVPPQDSKMPPLETFRLTEELVRQRAKDNVIIVTFGNYAFMDFILTWVKHLTDLEISNLLVGAMDTKLLEALYWQGVPVFDMGSHMSTVDVGWGSP TFHKMGREKVILIDAVLPFGVELLMCDTDMVWLKNPLPYLARYPEADVLTSSDQVVPTVTDDRLEIWQQVGAAFNIGIFHWRPTASAMKLAKEWKELLLA DDKIWDQNGFNDIVRKQLGPSVNDDDGLAYAFDGSLKLGILPASIFCSGHTYFVQAMHLQLRLEPYAVHTTFQYAGTEGKRHRLREAMAFYDPAVYYDAP GGFLSFKPSIPKNLLLEGEHNLESHFALVNFQIKQIRTALAIATLLNRTLVMPPLWCRLDRLWFAHPGILEGTLTKQPFICPLDHVFEVNVMLKELPEEE FGPGINIRESSFLDNPSMPKKVKESWLDVQICQEGSKGCNVSSTRPGTVRFPRRSNEETSREDKFRKRVKRYVGIWCCVDSHTPGHIYYDMYWDEKPGWK PIPPQLPEDDHPNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10027804 [exp]	0	1
AT5G40450			unknown protein		Lus10022266 [exp]	2.0	0.8619
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10001384 [exp]	9.5	0.8694
AT5G52580			RabGAP/TBC domain-containing p...		Lus10039968 [exp]	13.0	0.8199
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	14.3	0.8946
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	17.5	0.8737
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	19.1	0.8377
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10014225 [exp]	28.2	0.8610
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	28.7	0.8517
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	32.5	0.8479
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10033225 [exp]	32.8	0.8490

Compare expression of checked genes

Lus10027804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.