Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 329 / 9e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 315 / 5e-107 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 298 / 2e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 180 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10490 181 / 2e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 175 / 2e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G24530 174 / 5e-52 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 174 / 7e-52 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25310 173 / 2e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005037 [exp] 460 / 1e-163 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 379 / 4e-132 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 338 / 6e-116 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037292 [exp] 180 / 1e-53 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022292 [exp] 177 / 7e-53 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032930 [exp] 174 / 6e-52 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10026173 [exp] 174 / 1e-51 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011979 [exp] 173 / 1e-51 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10015573 [exp] 172 / 1e-51 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117100 [exp] 382 / 2e-133 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 369 / 4e-128 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 357 / 3e-123 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 347 / 1e-119 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 345 / 1e-118 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G024100 [exp] 186 / 2e-56 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G150100 [exp] 182 / 3e-55 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355100 [exp] 182 / 3e-55 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G451900 [exp] 179 / 6e-54 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 179 / 6e-54 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10027807 pacid=23156985 polypeptide=Lus10027807 locus=Lus10027807.g ID=Lus10027807.BGIv1.0 annot-version=v1.0 ATGAACTGCGTCCAGAAATGGCCCGAACCCGTAACCCGAGTCCAGTCCCTGTCCGAGAGCGGCATCCGAAAGATCCCCGACCGTTACGTCAGCAGGCCCC ACCACCTCCCTTCTCTCACTCTCAACATCAACAAACCTCACGCCGCACCACCGCCGGCCACGTCCAACATCCCGGTGATCGAGGTCGAGAAGGGGGCCGT CTTGGACTGGAGTGATTACTTTTTCCTTCATTACCTACCGGCGAGGATCCGGAACCCAACCAAGTGGCCCGCGTTCCCTGATTCTTGCAGGGAATTGGTG GGTGAATATGGAAAAGAGGTTGCAAAGCTAGGAGGAAAACTAATGAAGATATTCTCGAGCAATCTTGGCCTTGAAGAGGACGGTCTCCAAGACGCCTTCG GCGGGGAAGACTTCGGTGGATGCTTAAGGGTTAATTTCTACCCGAAATGCCCTCAGCCGGATCTCACCCTAGGTCTCTCCCCTCACTCCGACCCCGGTGG CATGACCATCCTCTTGCCTGACGAAAATGTCTCCGGACTCCAGGTCCGTAAATCCGGCAATTGGGTTACTGTTAAGCCCGTCGCCAATGCCTTCATCATC AACATCGGCGACCAGATTCAGGTGTTGAGCAATGCGATCTACAAAAGCGTGGAGCACAGGGTGATAGTGAACTCGGCCAAGGATCGAGTCTCCCTCGCGT TCTTCTACAATCCAAGGGGCGACCTTCAGATCGCACCGTCGAAGGAGCTAGTGAAGGCCGATCAACCAGCGCTTTACCCGTCAATGACGTATAATGAGTA CAGAATGTTCATCAGGACTAAGGGACCGTGTGGAAAGCAACAAGTTGAATCTTTCAAATCAACCTGTACTGGTAGTACTGGTACCAGTACTAGACGAAGT TAG
AA sequence Show only first row Show all	>Lus10027807 pacid=23156985 polypeptide=Lus10027807 locus=Lus10027807.g ID=Lus10027807.BGIv1.0 annot-version=v1.0 MNCVQKWPEPVTRVQSLSESGIRKIPDRYVSRPHHLPSLTLNINKPHAAPPPATSNIPVIEVEKGAVLDWSDYFFLHYLPARIRNPTKWPAFPDSCRELV GEYGKEVAKLGGKLMKIFSSNLGLEEDGLQDAFGGEDFGGCLRVNFYPKCPQPDLTLGLSPHSDPGGMTILLPDENVSGLQVRKSGNWVTVKPVANAFII NIGDQIQVLSNAIYKSVEHRVIVNSAKDRVSLAFFYNPRGDLQIAPSKELVKADQPALYPSMTYNEYRMFIRTKGPCGKQQVESFKSTCTGSTGTSTRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	0	1
					Lus10008157 [exp]	1.4	0.7956
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	2.0	0.7530
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	2.8	0.7366
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	8.3	0.7514
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	9.8	0.7274
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	14.7	0.6502
AT4G19510			Disease resistance protein (TI...		Lus10024149 [exp]	16.2	0.6491
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	18.4	0.6543
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	22.3	0.6752
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	24.5	0.7270

Compare expression of checked genes

Lus10027807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.