Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05580 628 / 0 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 611 / 0 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT2G29980 521 / 0 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G12120 197 / 8e-59 FAD2 fatty acid desaturase 2 (.1.2) AT4G30950 119 / 4e-29 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005039 [exp] 636 / 0 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10038321 [exp] 530 / 0 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10036184 [exp] 528 / 0 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10018245 [exp] 516 / 0 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10040660 [exp] 514 / 0 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10004176 [exp] 216 / 7e-66 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 213 / 1e-64 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 202 / 1e-60 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 201 / 3e-60 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117500 [exp] 669 / 0 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 658 / 0 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 656 / 0 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 654 / 0 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 563 / 0 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.016G046200 [exp] 196 / 3e-58 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 193 / 4e-57 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 193 / 1e-56 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 192 / 2e-56 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 141 / 3e-38 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10027809 pacid=23156992 polypeptide=Lus10027809 locus=Lus10027809.g ID=Lus10027809.BGIv1.0 annot-version=v1.0 ATGGCGAGCTGGGTTCTATCAGAATGCGGCATAAAGCCACTCCCTTCCGCCTTCCCTAAGCCCAGAACCGGAGCGCTTTCCCGAAATACCCTCCCCAAGC TCAGGTATTTACCCCCGAGGAGCAATCTCTCCGCCGCTGCCGACGGCGGCGCCTCAGATCTAAGCCTTAACCTACCTAAATTATCCTCCGTAGAGAAGAA AAAGCCGCTTTTGGGACAGGTGAGAGTTACTGCTCCGTTCAAGGTCGCTCCGGTGAAGGAGGAAGACGGAGAAGGAGAGTCCAATTTCGACCCAGGAGCG CCGCCGCCGTTCAATTTGGCCGACATTCGAGCTGCTATACCCAAGCATTGCTGGGTTAAAGATCCATGGAGGTCAATGGCTTACGTGGCGAGGGACGTGG CCGTTGTTCTCGGATTGGCAGCTGCCGCAGCTTATCTGAACAATTGGATCGTTTGGCCGCTGTATTGGGCGGCTCAGGGGACCATGTTCTGGGCTCTCTT TGTTCTTGGCCATGACTGTGGACATGGGAGCTTTTCAAGCAATCACAAGCTGAACAGTGTAGTTGGACACATTCTCCATTCTTCAATTCTTGTGCCTTAC CATGGATGGAGAATTAGCCATAGGACGCATCATCAGAACCATGGACATGTTGAGAACGATGAGTCATGGCATCCTTTGTCTGAGAAGATATTCAGGAGCT TGGATGCTACAACTCGAAGTATGAGGTTCACATTGCCTTTCCCCATGCTTGCTTATCCTTTCTATCTGTGGAACCGGAGTCCTGGAAAAAAGGGGTCTCA TTTCGACCCGAGTAGTGATTTGTTTGTGGCGAGTGAGAAGAAAGATGTGATCACTTCCACTGTTTGTTGGACAGCTATGGCTGCTTTGCTCGCAGGCTTG TCCTTTGTAATGGGTCCAATTCAGATGATCAAGCTATACGGAATTCCATATTGGGGATTTGTTATGTGGTTGGATTTTGTAACTTACTTGCATCACCATG GTCACGACGATAAGCTTCCTTGGTACCGCGGCAAGGAATGGAGTTACTTGAGAGGAGGGTTAACCACCATTGATAGAGACTATGGATGGATCAACAACAT CCACCACGATATTGGAACCCATGTTATTCACCATCTCTTCCCACAAATCCCTCACTACCACTTGATTGAAGCAACGGAAGCTGCAAAGCCAGTGCTTGGG AAGTACTACAAGGAACCAGCAAAATCAAAGCCGCTCCCTTTCCACCTAATCGGAGACTTGATAAAGAGCTTGAAGAGAGACCATTATGTTAGTGACACCG GAGATGTCGTCTACTATCAAACTGACCCTGAACTCCAAAGACCCTCATCATCATCATGA
AA sequence Show only first row Show all	>Lus10027809 pacid=23156992 polypeptide=Lus10027809 locus=Lus10027809.g ID=Lus10027809.BGIv1.0 annot-version=v1.0 MASWVLSECGIKPLPSAFPKPRTGALSRNTLPKLRYLPPRSNLSAAADGGASDLSLNLPKLSSVEKKKPLLGQVRVTAPFKVAPVKEEDGEGESNFDPGA PPPFNLADIRAAIPKHCWVKDPWRSMAYVARDVAVVLGLAAAAAYLNNWIVWPLYWAAQGTMFWALFVLGHDCGHGSFSSNHKLNSVVGHILHSSILVPY HGWRISHRTHHQNHGHVENDESWHPLSEKIFRSLDATTRSMRFTLPFPMLAYPFYLWNRSPGKKGSHFDPSSDLFVASEKKDVITSTVCWTAMAALLAGL SFVMGPIQMIKLYGIPYWGFVMWLDFVTYLHHHGHDDKLPWYRGKEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLG KYYKEPAKSKPLPFHLIGDLIKSLKRDHYVSDTGDVVYYQTDPELQRPSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	0	1
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	1.0	0.9518
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	1.7	0.9023
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	2.8	0.8989
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	4.5	0.8935
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	5.5	0.8740
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	5.7	0.8846
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	6.3	0.9092
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	8.1	0.8639
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	8.7	0.8692
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	8.8	0.8880

Compare expression of checked genes

Lus10027809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.