Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 56 / 1e-09 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005040 [exp] 90 / 9e-24 ND / Lus10001254 [exp] 85 / 1e-21 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10002478 [exp] 81 / 2e-20 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2) Lus10040188 [exp] 56 / 8e-10 AT2G40070 533 / 0.0 unknown protein Lus10008717 [exp] 53 / 1e-09 AT2G40070 52 / 5e-09 unknown protein Lus10009082 [exp] 54 / 5e-09 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10030399 [exp] 47 / 2e-06 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10037841 [exp] 46 / 2e-06 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10037838 [exp] 40 / 0.0004 AT2G40070 551 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117800 [exp] 69 / 4e-14 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G101600 [exp] 62 / 5e-13 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G117700 [exp] 60 / 2e-12 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G187700 [exp] 55 / 2e-09 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 44 / 1e-05 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027810 pacid=23156967 polypeptide=Lus10027810 locus=Lus10027810.g ID=Lus10027810.BGIv1.0 annot-version=v1.0 ATGGCAGAGAACAAGACAGCAAGAGCACTACTCTTTGGGTCGAACGATGTTGCCACAAAGCCTAAGCCCATGACCCCCGAGGAAATAAGAGCCAAATACA GGAAATCTGCTACGAATGTATCGGAAGCAGCTGCACATGCTAAGTCCATGCTTGAAGAAAGAAATGAGAAATTAGAGCAAATCAACCAGCACTCAGAGGA GCTGGAGAATAGATCTCAAGACTATGCATCAATGGCAAAGGAGCTTGCCAAGAAAATGGACAAGAAGAAATGGTGGCAACTAGTTTTAGGACTCACAATT CGCAGCTTCAAATGCAAGCGTGCACGCGGCGGTAGCCAAACAGAGGCATCAGTTGAGAGCCTCCATGATGAAGGACAAGGAAGAGGAGCTTGCCTTGTTC TTGGAGATGAAGAAGCACAGGAACAAGCTACAGCAGCAACAGGAGCTTGA
AA sequence Show only first row Show all	>Lus10027810 pacid=23156967 polypeptide=Lus10027810 locus=Lus10027810.g ID=Lus10027810.BGIv1.0 annot-version=v1.0 MAENKTARALLFGSNDVATKPKPMTPEEIRAKYRKSATNVSEAAAHAKSMLEERNEKLEQINQHSEELENRSQDYASMAKELAKKMDKKKWWQLVLGLTI RSFKCKRARGGSQTEASVESLHDEGQGRGACLVLGDEEAQEQATAATGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05570			transducin family protein / WD...		Lus10027810 [exp]	0	1
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	2.8	0.9686
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	3.5	0.9587
AT4G37445			unknown protein		Lus10001408 [exp]	4.5	0.9654
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	4.8	0.9243
AT4G22370			unknown protein		Lus10003793 [exp]	5.9	0.9564
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	6.5	0.9597
					Lus10035048 [exp]	9.5	0.9532
AT4G16400			unknown protein		Lus10038791 [exp]	9.9	0.9503
					Lus10019472 [exp]	11.2	0.9431
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	11.8	0.9424

Compare expression of checked genes

Lus10027810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.