Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51840 741 / 0 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G45300 147 / 8e-40 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1) AT5G65110 77 / 1e-14 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 64 / 1e-10 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT2G35690 60 / 2e-09 ACX5 acyl-CoA oxidase 5 (.1) AT4G16760 58 / 8e-09 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036122 [exp] 150 / 1e-40 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Lus10041711 [exp] 81 / 5e-16 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10007815 [exp] 69 / 4e-12 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 67 / 2e-11 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10024038 [exp] 60 / 2e-09 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10039894 [exp] 60 / 2e-09 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10004386 [exp] 59 / 6e-09 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 59 / 7e-09 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10002177 [exp] 45 / 0.0001 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118000 [exp] 762 / 0 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 747 / 0 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1) Potri.009G011700 [exp] 147 / 1e-39 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Potri.007G090400 [exp] 79 / 2e-15 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 65 / 7e-11 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.003G079200 [exp] 64 / 8e-11 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 63 / 2e-10 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain CL0544 [flax] [poplar] AcylCoA_ox_dh_N PF02771 [flax] [poplar] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027811 pacid=23157092 polypeptide=Lus10027811 locus=Lus10027811.g ID=Lus10027811.BGIv1.0 annot-version=v1.0 ATGACAGTCATGGAAAACAAGCTTCGCCAAGCAGATGATCTTAATGGCAGAGAGAGAACTTCCTATTATAGTTCCCCGCCTTTGGACGTCTCCATTGCTT TCCCTCAGGCAACTCCGGCATCCGAATTCCCTCCTCTCGTAGCGGATTACTATCAGTTGAATGATCTGTTGACTCATGAGGAGCAGGCTGTCAGGCTCAA AGTTAGGCAGTGTATGGAGAAAGAAGTTGCCCCAATCATGGCTGAGTATTGGGAGAAAGCAAAGTTTCCGTTTCATGTTGTTCCGAAACTAGGAGAAATG CTGGTAGCTGGCGGGACGATCCAGGGCTACGGATGTCCAGGACTTTCCGTCACTGCAAGTGCTCTTGCTACAGCAGAAGTCGCTAGAGTTGATGCTAGTT GTTCTACTTTCATTCTAGTCCACTCTTCGCTCGCAATGCTCACAATAGCGCTCTGTGGTTCGGAGGAACAAAAGCAGAAGTATTTGCCTTCTTTAGCAAA GTTAAACACTGTGGCTTGTTGGGCTTTGACTGAGCCTGACTATGGAAGTGATGCAAGTGCTTTGAGAACAACGGCCACTAAGGTAGCTGGTGGTTGGGTG CTCGAGGGCCAAAAACGCTGGATAGGAAATGGTACCTTCGCGGATTTATTAGTTATCTTTGCCCGAAGTGACACAACAAATCAGATTAATGGATTTATTG TGAAGAAAAATGCTCCAGGGCTAAAAGCTACAAAAATAGAGAACAAAATCGGCCTACGGATAGTGCAGAATGCAGACATTATCATGAACAGAGTTTTCGT CCCCGACGAGGACAGGTTACCTGGCGTGAACTCCTTCCAAGACACAAGCAAGGTGCTGGCAGTCTCGAGGGTGATGGTGGCTTGGCAGCCAATCGGAATA TGCATGGGAATCTATGACATGTGCCACCGGTACCTGACTCAGCGAAAGCAGTTCAAGGCACCACTGGCGTCATTCCAGATCAACCAACAGAAACTTGCGC AGATGCTGGGCAATGTTCAAGCCATGACCTTAGTTGGCTGGCGCCTCTGCAAGCTGTACGAAGCTGGCAAAATGACTCCTGGTCAAGCCAGTTTAGGAAA GTCTTGGATCACGTTGAGAGCTAGAGAAACAGCTGCACTTGGGAGGGAACTCCTGGGTGGGAACGGAGTATTGGCTGATTTTCTAGTTGCTAAGGCGTTC TGTGATTTGGAGCCGATTTATACGTACGAAGGAACTTACGACATCAACAGCTTGGTGACAGCAAGGGAAGTTACTGGCATTGCCAGCTTCAAGCCAGCAC CTCTTCCTCTCACCAAACGGAGCCGCTTATGA
AA sequence Show only first row Show all	>Lus10027811 pacid=23157092 polypeptide=Lus10027811 locus=Lus10027811.g ID=Lus10027811.BGIv1.0 annot-version=v1.0 MTVMENKLRQADDLNGRERTSYYSSPPLDVSIAFPQATPASEFPPLVADYYQLNDLLTHEEQAVRLKVRQCMEKEVAPIMAEYWEKAKFPFHVVPKLGEM LVAGGTIQGYGCPGLSVTASALATAEVARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAKLNTVACWALTEPDYGSDASALRTTATKVAGGWV LEGQKRWIGNGTFADLLVIFARSDTTNQINGFIVKKNAPGLKATKIENKIGLRIVQNADIIMNRVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGI CMGIYDMCHRYLTQRKQFKAPLASFQINQQKLAQMLGNVQAMTLVGWRLCKLYEAGKMTPGQASLGKSWITLRARETAALGRELLGGNGVLADFLVAKAF CDLEPIYTYEGTYDINSLVTAREVTGIASFKPAPLPLTKRSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Lus10027811 [exp]	0	1
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	4.0	0.7767
AT5G50175			unknown protein		Lus10043318 [exp]	4.8	0.8172
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	5.7	0.7907
AT5G50175			unknown protein		Lus10019469 [exp]	12.4	0.7751
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	15.5	0.7276
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	21.4	0.7524
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	31.7	0.7191
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	39.5	0.7105
AT2G31305		INH3	inhibitor-3 (.1)		Lus10022410 [exp]	41.3	0.6712
AT5G01970			unknown protein		Lus10031947 [exp]	41.9	0.7694

Compare expression of checked genes

Lus10027811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.