Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58330 105 / 1e-27 ZW2 transcription factor-related (.1) AT1G09950 86 / 3e-20 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT4G18650 80 / 7e-18 transcription factor-related (.1) AT5G06839 73 / 1e-14 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT3G14880 68 / 2e-13 unknown protein AT1G22070 67 / 1e-12 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06960 65 / 5e-12 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G77920 65 / 7e-12 bZIP bZIP transcription factor family protein (.1) AT5G06950 62 / 4e-11 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 61 / 8e-11 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025265 [exp] 191 / 1e-59 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10028231 [exp] 99 / 6e-25 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10005041 [exp] 95 / 4e-24 AT1G58330 51 / 1e-14 transcription factor-related (.1) Lus10013711 [exp] 84 / 3e-19 AT3G14880 251 / 2e-84 unknown protein Lus10007282 [exp] 78 / 5e-17 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10039193 [exp] 76 / 3e-16 AT3G14880 135 / 5e-39 unknown protein Lus10029229 [exp] 73 / 3e-15 AT4G18650 207 / 2e-67 transcription factor-related (.1) Lus10020610 [exp] 72 / 3e-14 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10042453 [exp] 71 / 3e-14 AT3G14880 145 / 3e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058200 [exp] 88 / 7e-21 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.001G390100 [exp] 78 / 5e-17 AT3G14880 255 / 3e-86 unknown protein Potri.007G098800 [exp] 77 / 2e-16 AT3G14880 159 / 6e-48 unknown protein Potri.004G203400 [exp] 68 / 5e-13 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 67 / 1e-12 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.002G090700 [exp] 66 / 3e-12 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.003G194600 [exp] 66 / 4e-12 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 64 / 1e-11 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 64 / 2e-11 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G039000 [exp] 62 / 4e-11 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027812 pacid=23157062 polypeptide=Lus10027812 locus=Lus10027812.g ID=Lus10027812.BGIv1.0 annot-version=v1.0 ATGCAGCACCACCGCCGTCCTCGGCCGCCGGCCAGGACTCGAAGCAGCTCTTCCTCCTCCGCTGCCACCAATGCAGCGGACCTCTTCGCCGCCTCATTTG ACAGCATGGCCGTCCGACAGCTACACCAGCAACACCACCACGACGAGCTCCAAACAGCTGTCGATTCCGCCGCCGCCTGCGACGACGGCCACATCCGGGA CCTGGTCAACCGGGTCCTGACCCATTACCAGCACTATTTCGAAGAGAAGTCCCGACTCGCCCACTCCGACGTCTTCATCCTCTTCTCCCCGCCGTGGTTC ACTTCCTTGGAGCGGAGCTTCTTCTGGATCGCCGGGTTCAAGCCGGGTCTCGCCTTCCGGGTCCTGCGCGATTCCGTTAGCAGCCTCTTGCCGGAGCAGG ATCGGAGCTTGAGGGAGCTCAAGGAGGAGATTCGAGTCCAGGAAAGGCTGCTAAATGACGAATTGGCCCGGATCCACGAGTCCGTCGGGTCTCCGCCGGT GAGCGCGTGGGCACGGAAGCGCGTGGAGGAGGAGGAAGCGGACGAAGTAGCTCCTCCGCCTCCGTTGCCGGAGGGGATTAAGTTGGATTTGGAGACGGTG GTTCTGAACGCCGACACTCTGAGGACCAACACGGTGATGAGAATCGGACAGATTCTGAACCCTAGGCAGAACTTGGAGTTCGTCGCGGCGGGTACAAGGC TGCAATTAGCTGTCAGGGCATTGGGGTTCGGGAAATCTGCCAGATAA
AA sequence Show only first row Show all	>Lus10027812 pacid=23157062 polypeptide=Lus10027812 locus=Lus10027812.g ID=Lus10027812.BGIv1.0 annot-version=v1.0 MQHHRRPRPPARTRSSSSSSAATNAADLFAASFDSMAVRQLHQQHHHDELQTAVDSAAACDDGHIRDLVNRVLTHYQHYFEEKSRLAHSDVFILFSPPWF TSLERSFFWIAGFKPGLAFRVLRDSVSSLLPEQDRSLRELKEEIRVQERLLNDELARIHESVGSPPVSAWARKRVEEEEADEVAPPPPLPEGIKLDLETV VLNADTLRTNTVMRIGQILNPRQNLEFVAAGTRLQLAVRALGFGKSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58330		ZW2	transcription factor-related (...		Lus10027812 [exp]	0	1
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	2.6	0.8713
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	3.0	0.8608
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	3.2	0.8657
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	3.9	0.8517
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10013313 [exp]	6.2	0.8204
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	7.4	0.8350
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	11.2	0.8472
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	12.5	0.8568
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	15.0	0.8463
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	16.0	0.8290

Compare expression of checked genes

Lus10027812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.