Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01360 569 / 0 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 395 / 1e-134 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 392 / 2e-134 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT1G73140 378 / 5e-129 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 374 / 3e-127 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G40160 358 / 4e-121 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 350 / 2e-117 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01620 338 / 8e-113 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 322 / 5e-107 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G54260 260 / 2e-83 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005042 [exp] 835 / 0 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007497 [exp] 405 / 6e-139 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 404 / 1e-138 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 401 / 3e-137 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10040953 [exp] 371 / 1e-125 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028141 [exp] 366 / 5e-124 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10009839 [exp] 366 / 1e-123 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10042845 [exp] 360 / 2e-121 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 330 / 8e-110 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119100 [exp] 671 / 0 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187600 [exp] 400 / 1e-136 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 392 / 3e-133 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 382 / 2e-130 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 382 / 3e-130 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 380 / 7e-130 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G070000 [exp] 379 / 9e-129 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G184000 [exp] 374 / 7e-127 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187300 [exp] 361 / 1e-121 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 341 / 8e-114 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10027813 pacid=23156923 polypeptide=Lus10027813 locus=Lus10027813.g ID=Lus10027813.BGIv1.0 annot-version=v1.0 ATGAGCTTATCAACTTCTTCTTCATCATCAGTGATCAAGCTCCCTTACCCCATCGTCTTCATATCACTCTGCACCTTAGCCTTCATTGCCCTTCTCTATG CTGACTCATCCTGGGCTTTCTTCAAGGCCAAGTCTTGCTCTCGAAAACCCGGCCTTCGAAAATCGAAGCATCGGCTTTCGGACCACGAGGAGCTGAAGAA CTCTGCGATCGACGACCGGTTTGAGTTCGACGCGGAAGAGTGCAGCGTGAATACAGGGAAGTGGGTTTTCAACAAGACGATCAAGCCTCTGTACACGGAC CGGAGCTGCCCATACCTTGACAGGCAAGTTTCCTGCGTCAAGAACGGCCGGAAGGATTCCGATTACCGGCATTGGGAATGGCAGCCTGAAGATTGCTCCC TTCCAAGATTCGATGCCGAGGTGGCACTGAAGAAGCTAAGAGGCAAGAGGCTAATGTTCGTGGGAGACTCATTACAAAGAGGGCAATGGCAATCATTCGT GTGTCTGGTAGAATGGATGATTCCTCAAGACAAGAAGTCCCTGAAACGAGGCGACTTCCACACGGTGTTCACCGCGAAAGAATACGACGCGACGATCGAG TTCTATTGGGCTCCGTTCCTGGTCGAATCGAACACCGACAGACCGATCATCGGAGACCCGAAGAAGCGGATCATCAAGGTGGATTCTGTGGCCAAGCACG CCAAGAACTGGGTCGGTGTGGATGTTCTGGTGTTTAACACTTACGTTTGGTGGATGAGCGGCCTCACTCTCAATACCCTTTGGGGATCGTTTGAAAATGG GGCAGATGGGTATGAAGTGTTGGACACGGCAGTTGCTTACAAAGTAGGGTTGAGGACTTGGGCCAATTGGGTCGATTCAAATATCAACCTGAATAAGACT CGGGTGTTCTTCACTACCATGTCCCCCACCCACTCAAGGAGTGCGGATTGGGGGAAGCCGAATGGGACGAAGTGCTTCAACGAAACGAGGCCGATCATGA AGAGGCGGTTTTGGAGCACTGGCTCCGACAGAAAGCTGATGAGCGTGGTTAACGGGGTGAGGGACCGGATGAAAGTTCCGGTGACATTTCTGAACATAAC TCAGCTCTCTGACTACAGAATCGATGGCCACGCTTCGGTGTATACGGAGACCGGCGGGAAGTTGCTGACGGAGGAACAGAGAGCGGATCCGGTACACAAT GCTGATTGCATCCATTGGTGCCTCCCCGGTGTTCCTGATACTTGGAATCAAATCTTTCTGGCGTATTTGTAG
AA sequence Show only first row Show all	>Lus10027813 pacid=23156923 polypeptide=Lus10027813 locus=Lus10027813.g ID=Lus10027813.BGIv1.0 annot-version=v1.0 MSLSTSSSSSVIKLPYPIVFISLCTLAFIALLYADSSWAFFKAKSCSRKPGLRKSKHRLSDHEELKNSAIDDRFEFDAEECSVNTGKWVFNKTIKPLYTD RSCPYLDRQVSCVKNGRKDSDYRHWEWQPEDCSLPRFDAEVALKKLRGKRLMFVGDSLQRGQWQSFVCLVEWMIPQDKKSLKRGDFHTVFTAKEYDATIE FYWAPFLVESNTDRPIIGDPKKRIIKVDSVAKHAKNWVGVDVLVFNTYVWWMSGLTLNTLWGSFENGADGYEVLDTAVAYKVGLRTWANWVDSNINLNKT RVFFTTMSPTHSRSADWGKPNGTKCFNETRPIMKRRFWSTGSDRKLMSVVNGVRDRMKVPVTFLNITQLSDYRIDGHASVYTETGGKLLTEEQRADPVHN ADCIHWCLPGVPDTWNQIFLAYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	0	1
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	1.0	0.9827
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	2.4	0.9719
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	2.4	0.9714
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	3.0	0.9574
AT3G13130			unknown protein		Lus10004415 [exp]	3.2	0.9661
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	4.0	0.9533
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	4.0	0.9702
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	6.5	0.9478
					Lus10026494 [exp]	7.7	0.9557
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	7.7	0.9640

Compare expression of checked genes

Lus10027813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.