Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 1279 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) AT5G01350 58 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002849 [exp] 1360 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10037223 [exp] 946 / 0 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 900 / 0 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 680 / 0 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 258 / 5e-80 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119300 [exp] 1339 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.006G102000 [exp] 1338 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.010G034800 [exp] 956 / 0 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.016G118800 [exp] 70 / 9e-15 AT5G01350 85 / 1e-23 unknown protein Potri.006G101901 [exp] 69 / 2e-14 AT5G01350 95 / 1e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10027814 pacid=23157056 polypeptide=Lus10027814 locus=Lus10027814.g ID=Lus10027814.BGIv1.0 annot-version=v1.0 ATGGCGGGTGGAGGAAATTTCATCCATAGAGTGGTTTCGTATGTGGTGAATGAGCTTGTCGTGAATAGTTTAGCCAACAGCCCTTCGTTTCAAAGATTTG CAGTGAGAACATCGAAGAGGTTGGAGGAGGTTTCGAGCCTTGCTGAGAAGAAGAAAAGAGAACTTGCTGAACATGTGAGAGATGTAACTGATCTCTTTCA CGTTTCAATCCTAGATAAACATCTACGATGTCACATCACAAACACCTTTGGCCGCTCCTATGTTAACCTTTACGTACTCAAACATGGTGGTGGAAGAATC CTTATGACTGCGACACCATCCTCCTCTATTTCGACGGTGGAATCGTTGACGGATTTTATACCTTTCCCCGCTCCTCTTTCAACCTGTAAATCTGCTGGAC ATACTAAGAAAACTGGAAATCTCATCAGACCAACCTCTCCAAAATCTCCTGTTGTCAGCGCTAGTGCTTTTGAGAGTGTAGAAGGATCAGGTGAAGAAGA AGATAATGTGGTTGATGATGTGCTTCCTAATGGCACTTCTGAGAGTTTTAACAATAGTGTGGAGCAAATTGCGCCTGCTGCAAGTATGATCCGGTCCCAT AGTGTATCTGGTGATCTCCATGGTGTCCAGCCCGACCCAATTGCTGCTGATATATTGAGGAAAGAGCCCGAACATGAAACTTTTGCAAGGCTTAGAATTA CTCCTACCGAGGTACCATCACCTGATGAGGTGGAAGTTTATGTCATTCTCCAAGAATGTCTTGAAATGAGAAAGAAATATTTGTTCCAGGAAGCAATTGC TCCGTGGGAAAAGGAAGTTATTTCTGACCCTAGCACACCAAAACGTAATAACGAACCTTTCTTCTATGCTTCAGAAGGGAAGTCTGATCACTATTTTGAG ATGCAAGATGGTGTAATCCATGTCTACCCAAACAAAGATTCCAAGGAAGAGCTCTTTCCTGTTGCTGATGCAACAACTTTTTTCACGGATTTGCATCACA TACTCAAAGTCATTGCTGCTGGAAATATCAGGACTGTATGCCATCATCGGCTTAATCTTCTGGAACAAAAATTCAACCTCCATTTGATGCTTAATGCTGA TAGGGAGTTTCTAGCCCAAAAAAGTGCTCCACATCGTGATTTCTATAACGTCAGGAAAGTTGACACACATGTTCATCATTCTGCATGCATGAACCAGAAG CACCTTCTGAGGTTTATAAAATCAAAACTGAGGAAGGAGCCTGACGAGGTTGTGATATTCAGAGATGGGACTTACTTAACACTGAAAGAAGTTTTTGAGA GTCTGGATTTAACTGGGTATGATCTCAATGTTGATCTTTTGGATGTTCATGCGGACAAAAGTACTTTTCATCGCTTCGACAAGTTCAACCTTAAGTATAA TCCTTGCGGGCAAAGTAGACTCAGAGAGATTTTCCTTAAGCAGGATAATCTCATCCAAGGTCGTTTCCTTGCGGAGTTAACGAAACAGGTGTTTTCCGAT CTTGAAGCAAGTAAATACCAGATGGCTGAATATCGCCTATCGATATATGGGCGGAAGCAAAGTGAGTGGGACCAACTTGCTAGCTGGATAGTGAATAATG ATTTATACAGTGAGAATGTCGTCTGGTTAATACAGCTTCCAAGACTATACAATATATACAAGGAAATGGGGATTGTAACCTCATTTCAGAATATCCTCGA CAACATATTTATTCCACTGTTCGAGGTTACCGTTGATCCAAATTCACATCCTCAGCTGCATGTTTTCTTGAAACAGGTTGTTGGTTTGGATTTGGTTGAT GATGAAAGCAAGCCCGAAAGGCGCCCCACGAAGCATATGCCCACTCCAGCTCAGTGGACAAATGTTTTCAATCCGGCTTTTTCGTACTATGTGTACTACT GCTATGCCAATCTCTACACACTAAACAAGCTTCGTGAGTCAAAGGGCATGACAACCATCAAATTCCGTCCACATTCTGGAGAGGCTGGAGATATCGACCA CCTTGCTGCAACATTTCTTACAACGCATAATATCGCCCACGGGATCAATTTGAGGAAATCTCCCGTTCTTCAGTATTTATATTACTTGGCACAGATTGGC CTGGCTATGTCTCCTCTGAGCAACAATTCTTTGTTTCTTGACTACCATCGCAACCCTTTTCCGACGTTTTTCCTCCGGGGTCTCAATGTCTCGCTCTCTA CCGACGATCCTCTCCAAATCCACTTGACAAAAGAGCCCCTGGTTGAAGAGTACAGCATAGCTGCTTCCGTCTGGAAATTAAGCTCTTGTGACCTTTGCGA GATTGCCCGGAATTCGGTCTACCAGTCTGGCTTCTCTCATGCTTTGAAGTCACATTGGATAGGGAAGCAGTACTACAAGAGAGGACCAGACGGTAATGAC ATTCACAAGACAAATGTACCTCATATTCGGGTGGAATTTCGTGACACGATATGGAGGGACGAGATGCAGCAAGTTTACCTCGGGAAGGCCTTTATCCCCG AGGACGTGGACAAATAG
AA sequence Show only first row Show all	>Lus10027814 pacid=23157056 polypeptide=Lus10027814 locus=Lus10027814.g ID=Lus10027814.BGIv1.0 annot-version=v1.0 MAGGGNFIHRVVSYVVNELVVNSLANSPSFQRFAVRTSKRLEEVSSLAEKKKRELAEHVRDVTDLFHVSILDKHLRCHITNTFGRSYVNLYVLKHGGGRI LMTATPSSSISTVESLTDFIPFPAPLSTCKSAGHTKKTGNLIRPTSPKSPVVSASAFESVEGSGEEEDNVVDDVLPNGTSESFNNSVEQIAPAASMIRSH SVSGDLHGVQPDPIAADILRKEPEHETFARLRITPTEVPSPDEVEVYVILQECLEMRKKYLFQEAIAPWEKEVISDPSTPKRNNEPFFYASEGKSDHYFE MQDGVIHVYPNKDSKEELFPVADATTFFTDLHHILKVIAAGNIRTVCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSACMNQK HLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSD LEASKYQMAEYRLSIYGRKQSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKEMGIVTSFQNILDNIFIPLFEVTVDPNSHPQLHVFLKQVVGLDLVD DESKPERRPTKHMPTPAQWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTTHNIAHGINLRKSPVLQYLYYLAQIG LAMSPLSNNSLFLDYHRNPFPTFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGKQYYKRGPDGND IHKTNVPHIRVEFRDTIWRDEMQQVYLGKAFIPEDVDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10027814 [exp]	0	1
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	2.0	0.8698
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	5.2	0.8909
AT2G22040			Transducin/WD40 repeat-like su...		Lus10026332 [exp]	5.3	0.8176
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	9.5	0.7021
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	12.1	0.8642
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	14.0	0.8641
AT4G00755			F-box family protein (.1.2)		Lus10041367 [exp]	14.7	0.5812
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	16.0	0.8636
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	17.8	0.8559
					Lus10022573 [exp]	18.9	0.8385

Compare expression of checked genes

Lus10027814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.