Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51820 583 / 0 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) AT3G11945 61 / 3e-10 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT2G18950 52 / 5e-07 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002850 [exp] 543 / 0 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 539 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10000126 [exp] 265 / 3e-88 AT3G51820 253 / 1e-83 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10016221 [exp] 60 / 1e-09 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10029321 [exp] 59 / 2e-09 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10025472 [exp] 49 / 3e-06 AT2G18950 504 / 7e-179 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10006961 [exp] 48 / 6e-06 AT2G18950 519 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102100 [exp] 610 / 0 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.016G119400 [exp] 580 / 0 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.006G197600 [exp] 59 / 2e-09 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.018G022000 [exp] 57 / 7e-09 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.018G090700 [exp] 51 / 7e-07 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G166100 [exp] 43 / 0.0003 AT2G18950 379 / 2e-130 VITAMIN E 2, homogentisate phytyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10027815 pacid=23156936 polypeptide=Lus10027815 locus=Lus10027815.g ID=Lus10027815.BGIv1.0 annot-version=v1.0 ATGGCGTCCCTGCTCAACACATCTTTATCCGTCAGAGGATTCTCAAATGCCAGCTCCAGACGAGCTCTAACGACCGAGTCACCACTCTCCCTCGCTATCT CAAGGCGTCATCGGGTTACAATCAGAGCAGCAGAGACTGATAGGAGCGAAGTGAAACCTCAGGCGCCGGATAAGGCTCCCGCCGGTGACGGTTCGAGCTT CAATCAGCTTTTGGGGATGAAAGGAGCTGCTCAGGAAACTAATAAATGGAAAATTCGACTTCAGCTAACTAAACCGGTAACTTGGCCGCCATTGGTATGG GGAGTTGTTTGTGGAGCAGCTGCTTCTGGAAACTTCCACTGGACTCCGGAGGATGTTGCGAAATCAATTCTCTGCATGATGATGTCTGGTCCGTGTCTAA CTGGCTACACACAGACGATCAACGACTATTATGATCGTGAGATCGATGCAATCAACGAACCTTACCGGCCGATTCCTTCTGGAGCCATTTCTGAGAATGA GGTTATTACTCAGTTCTGGGTGCTGCTTCTAGGAGGCCTTGGCATCGCTGGTATATTGGATGTTTGGGCAGGGCATGACTTCCCAATAGTTTTCTACCTT GCTTTGGGAGGGTCCTTGCTGTCTTACATATACTCCGCTCCGCCTCTGAAGCTTAAACAGAATGGATGGATAGGAAATTTCGCTCTTGGCGCGAGTTACA TCAGTTTGCCGTGGTGGGCTGGGCAAGCTTTGTTTGGGACCCTTACACCTGACGTAATTGTTCTGACACTCCTCTACAGCATAGCCGGGCTGGGTATCGC CATTGTAAACGACTTCAAGAGTATTGAAGGAGACAGAGCGATGGGACTACAGTCGTTACCTGTGGCCTTCGGTGCTGAAACGGCTAAATGGATCTGCGTT GGTGCCATCGACGTAACACAGTTATCCGTAGCGGGATATCTCCTTGCATCTGGGAAACCTTACTACGCCTTGGCCCTCCTAGGACTGATAATTCCACAAG TCGTTCTCCAGTTCCAGTACTTCCTGAAGGACCCAGTCAAGTACGACGTCAAATACCAGGCTAGTGCACAGCCTTTCCTTGTGCTTGGTTTGTTAGTGAC TGCTCTTGCAACCAGCCACTAG
AA sequence Show only first row Show all	>Lus10027815 pacid=23156936 polypeptide=Lus10027815 locus=Lus10027815.g ID=Lus10027815.BGIv1.0 annot-version=v1.0 MASLLNTSLSVRGFSNASSRRALTTESPLSLAISRRHRVTIRAAETDRSEVKPQAPDKAPAGDGSSFNQLLGMKGAAQETNKWKIRLQLTKPVTWPPLVW GVVCGAAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDYYDREIDAINEPYRPIPSGAISENEVITQFWVLLLGGLGIAGILDVWAGHDFPIVFYL ALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDVIVLTLLYSIAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGAETAKWICV GAIDVTQLSVAGYLLASGKPYYALALLGLIIPQVVLQFQYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	2.0	0.9419
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	4.0	0.9367
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	4.5	0.9356
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	4.6	0.9385
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	5.7	0.9290
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	6.5	0.9397
					Lus10005791 [exp]	7.3	0.9334
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	8.0	0.9221
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	8.4	0.9288
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10029785 [exp]	8.5	0.9254

Compare expression of checked genes

Lus10027815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.