Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01340 526 / 0 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT3G54110 114 / 2e-29 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 110 / 8e-28 Mitochondrial substrate carrier family protein (.1) AT5G58970 105 / 2e-26 ATUCP2 uncoupling protein 2 (.1.2) AT2G37890 105 / 5e-26 Mitochondrial substrate carrier family protein (.1) AT1G34065 102 / 1e-24 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G03115 101 / 1e-24 Mitochondrial substrate carrier family protein (.1) AT4G24570 99 / 9e-24 DIC2 dicarboxylate carrier 2 (.1) AT3G53940 99 / 2e-23 Mitochondrial substrate carrier family protein (.1) AT5G19760 98 / 2e-23 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005045 [exp] 633 / 0 AT5G01340 518 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10035538 [exp] 108 / 3e-27 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 106 / 1e-26 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10007883 [exp] 107 / 4e-26 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10017187 [exp] 105 / 6e-26 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 103 / 2e-25 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 102 / 7e-25 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10034104 [exp] 101 / 2e-24 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10000906 [exp] 100 / 4e-24 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119500 [exp] 548 / 0 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.016G110100 [exp] 108 / 3e-27 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.006G095500 [exp] 107 / 7e-27 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 107 / 1e-26 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.010G121500 [exp] 105 / 1e-25 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.016G119650 [exp] 97 / 2e-25 AT5G01340 88 / 5e-23 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.003G053900 [exp] 102 / 5e-25 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 102 / 6e-25 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 100 / 2e-24 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.002G200900 [exp] 99 / 1e-23 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10027817 pacid=23156881 polypeptide=Lus10027817 locus=Lus10027817.g ID=Lus10027817.BGIv1.0 annot-version=v1.0 ATGGCAGAGCCCAACAACCAAACCCCGACCAACCGCCATCCGAACAAGGCCACAATCCCGCCGTACATGAAGGCGATGTCGGGATCGCTCGGAGGGATAA TGGAGGCCTGCTGTCTACAGCCGATAGACGTCATCAAGACTCGCCTGCAGCTCGACCGGAGCGGGGCTTACAGGGGAATCGTCCACTGTGGATCCACGGT TTGCCAGACGGAAGGGGTTCGAGCTCTGTGGAAAGGATTGACCCCTTTCGCCACTCACTTGACTTTGAAATACTCGCTCCGGATGGGGACCAACGCCGTG CTTCAGTCCGCGTTCAAGGATTCGCAGACTGGACACCTCAGCAATGGCTCCAGGCTCATGTCTGGTTTTGGTGCTGGCGTTTTGGAGGCTCTCGTCATCG TTACTCCTTTCGAGGTGGTGAAGATCAGGCTACAGCAGCAAAAGGGATTAAGTTCTGATCTTCTCAAGTACAAAGGACCAGTACATTGTGCCCGTTTGAT CGTCCGAGAGGAAGGAATCCTAGGTCTGTGGGCAGGTGCGGCACCAACCGTGATGCGAAATGGCACGAACCAGGCAGCCATGTTCACAGCCAAGAACGCA TTCGACATCCTATTGTGGAAGAAGAACGAAGGGGACGGGAAAGTTCTCCTACCGTGGCAGTCCATGATCTCAGGATTTCTCGCAGGAACAGCCGGTCCGA TCTGCACAGGACCTTTCGACGTGGTGAAAACTCGGCTCATGGCTCAGAGTCGAGCAGGTGGTAATATGAAGTACAACGGAATGGTTCATGCGATCAGGAC AATCTATGCAGAAGAAGGACTGCTTGCCTTGTGGAAAGGATTGATACCTCGGCTGATGAGGATCCCGCCCGGGCAGGCTATAATGTGGGCTGTGGCTGAC CAGGTCATGGGTTTGTATGAGAAGAGGTATATACCCAGTGCAGCTTTGTAG
AA sequence Show only first row Show all	>Lus10027817 pacid=23156881 polypeptide=Lus10027817 locus=Lus10027817.g ID=Lus10027817.BGIv1.0 annot-version=v1.0 MAEPNNQTPTNRHPNKATIPPYMKAMSGSLGGIMEACCLQPIDVIKTRLQLDRSGAYRGIVHCGSTVCQTEGVRALWKGLTPFATHLTLKYSLRMGTNAV LQSAFKDSQTGHLSNGSRLMSGFGAGVLEALVIVTPFEVVKIRLQQQKGLSSDLLKYKGPVHCARLIVREEGILGLWAGAAPTVMRNGTNQAAMFTAKNA FDILLWKKNEGDGKVLLPWQSMISGFLAGTAGPICTGPFDVVKTRLMAQSRAGGNMKYNGMVHAIRTIYAEEGLLALWKGLIPRLMRIPPGQAIMWAVAD QVMGLYEKRYIPSAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	1.0	0.8787
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	1.4	0.8316
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	2.0	0.7884
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	3.5	0.8019
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10027077 [exp]	4.4	0.7164
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	5.0	0.7710
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	13.9	0.7081
AT1G28530			unknown protein		Lus10015294 [exp]	16.2	0.7641
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	18.7	0.7390
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	22.8	0.7481

Compare expression of checked genes

Lus10027817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.