Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51800 568 / 0 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT2G44180 103 / 6e-24 MAP2A methionine aminopeptidase 2A (.1) AT3G59990 102 / 1e-23 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT1G13270 45 / 9e-05 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT4G37040 42 / 0.0006 MAP1D methionine aminopeptidase 1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005046 [exp] 681 / 0 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10003379 [exp] 627 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 625 / 0 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 334 / 1e-105 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10000403 [exp] 83 / 5e-17 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 62 / 2e-10 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 56 / 3e-08 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10027121 [exp] 48 / 7e-06 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10019308 [exp] 47 / 3e-05 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102200 [exp] 628 / 0 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 624 / 0 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.004G084800 [exp] 97 / 5e-22 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 93 / 2e-20 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.005G137400 [exp] 45 / 6e-05 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10027818 pacid=23157036 polypeptide=Lus10027818 locus=Lus10027818.g ID=Lus10027818.BGIv1.0 annot-version=v1.0 ATGTCGGACGAAGAGAGGGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTTGTCACCAAATATAAAGGCGCCGCTGAGATCGTCAATAAGGCCTTGC AGTTGGTCGTGAAAGAATGCAAACCGAAGGTGAAGATCGTTGACCTATGTGAGAAAGGGGATTCTTACATCATAGAGCAAACTGGTAACATGTACAAGAA CGCTAAGAAGAAGATCGAAAAAGGAGTGGCATTTCCTACTTGTGTATCTGTGAACAATACTGTTGGCCATTTGTCTCCGCTTGCCAGTGATGAGAGGGTG TTGGAAGAGGGTGACATTGTTAAGATTGATATGGGTTGTCATATAGATGGATTCATTGCGGTGGTTGCACATACTCATGTTGTTCATGATGGAGCGATTA CTGGTAGAGCTGCTGATGTGATTGCAGCTGCCAATACTGCTGCTGAAGTTGCTTTGAGGCTTGTGAGGCCTGGGAAAAAGAACCAAGACGTCACAGATGC AATTCAGAAGGTTGCTGCCGCTTATGACTGCAAGATCGTGGAAGGTGTCCTCAGCCACCAGCTGAAGCAGTTTGTGATAGATGGGAACAAAGTTATACTC AGTGTTTCCAATCCGGACACAAGAGTGGATGATATCGAATTTGAGGAGAACGAAGTTTATGCAGTAGATATTATAACAAGCACCGGTGAAGGCAAGCCTA AGCTGCTAGACGAGAAAGAGACTACCATATACAAGAGAGCTGTGGACAAGAATTATCACTTGAAGTTGAAAGCATCAAGATTCATTTTCAGTGAAATTAG TCAGAAGTTCCCCATCATGCCTTTCACTGCCAGGGCCTTGGAAGAGAAAAGAGCTAGGTTGGGACTGGTGGAATGTGTGAATCATGAACTGCTCCAGCCT TATCCCGTTCTGCACGAAAAGCCCGGTGATTATGTAGCTCACATCAAGTTCACCGTCTTGCTGATGCCAAATGGTTCGGACAGGATTACATCACATCCTC TACAGGAACTTCAATCTTCAAAGACAATAGAAGATCCTGAAATCAAGGCTTGGTTAGCTCTGGGTACAAAGACAAAGAAGAAGGGTGGAGGAAAGAAGAA GAAAGGTAAGAAAGTTGAGAAAGCTGAAGATGCTGCTGAAGCCGAAGCCGAAGCCGAACCAATGGACGAAACATCCAAAGCCTAA
AA sequence Show only first row Show all	>Lus10027818 pacid=23157036 polypeptide=Lus10027818 locus=Lus10027818.g ID=Lus10027818.BGIv1.0 annot-version=v1.0 MSDEEREEKELDLTSPEVVTKYKGAAEIVNKALQLVVKECKPKVKIVDLCEKGDSYIIEQTGNMYKNAKKKIEKGVAFPTCVSVNNTVGHLSPLASDERV LEEGDIVKIDMGCHIDGFIAVVAHTHVVHDGAITGRAADVIAAANTAAEVALRLVRPGKKNQDVTDAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVIL SVSNPDTRVDDIEFEENEVYAVDIITSTGEGKPKLLDEKETTIYKRAVDKNYHLKLKASRFIFSEISQKFPIMPFTARALEEKRARLGLVECVNHELLQP YPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQSSKTIEDPEIKAWLALGTKTKKKGGGKKKKGKKVEKAEDAAEAEAEAEPMDETSKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	1.4	0.9738
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	2.0	0.9702
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	2.2	0.9599
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	3.0	0.9664
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	5.3	0.9559
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	5.3	0.9657
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	6.3	0.9542
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10026219 [exp]	6.3	0.9330
AT3G59670			unknown protein		Lus10008349 [exp]	6.8	0.9433
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	7.1	0.9474

Compare expression of checked genes

Lus10027818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.