Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40850 498 / 1e-177 UPM1 urophorphyrin methylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005047 [exp] 677 / 0 AT5G40850 501 / 7e-179 urophorphyrin methylase 1 (.1.2) Lus10003913 [exp] 523 / 0 AT5G40850 482 / 2e-171 urophorphyrin methylase 1 (.1.2) Lus10037476 [exp] 477 / 8e-170 AT5G40850 430 / 2e-151 urophorphyrin methylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G226900 [exp] 503 / 6e-180 AT5G40850 500 / 1e-178 urophorphyrin methylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00590 [flax] [poplar] TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Representative CDS sequence Show only first row Show all	>Lus10027819 pacid=23157089 polypeptide=Lus10027819 locus=Lus10027819.g ID=Lus10027819.BGIv1.0 annot-version=v1.0 ATGGCGGTCGCTGCTGTTTACAAGCTCCCCCATCTTTACCCTTCTCCTTCCTCTCCGTCTCTCTCTTTACAGTTCCCCCAAACCCCAATCACTGTCCGTT GTCGGAGTGCCGATTCCCCTTTCACCGAAAAGCACTCTCTCCAGCAATACCGGCGGGACAATTGGCTTTACCAACAGCACCAGCTCAAATCCGAACCCAA ATCGGATTCCGGTGATGAAGACTCAATCAGGCGAAACGACATCGCATTGCAGCTGCCGGAGCTGAAGAAGCTGCTCCAGGTCCTCAGGGAAAAGAGAAAC GAGTTGGATGAATCGCGGAAATGCGGGAGTGTGTTCTTGGTCGGCACTGGGCCTGGTGACCCTGACCTGTTGACGATTAAAGCTCTGAGAGTTATACAGA AGGCTGATTTATTGTTGTACGATAGATTGGTGTCGAATGATGTTCTTGATTTGGTTGGTCCCGGTGCTCGATTGCTGTATGTTGGCAAGACTGCTGGCTA CCACAGCCGAACCCAGGAGGAGATACACGAGTTGCTTTTGAGCTTTGCTGAAGCTGGAGCTAATGTTGTCAGGCTCAAAGGAGGGGATCCTCTGGTCTTT GGTAGAGGTGGTGAGGAAATGGATTTTCTGCAGCAGCAAGGAATCCAAGTCAAGGTTATTCCAGGGATCACAGCCGCTTCGGGAATTTCAGCAGAACTGG GGATTCCATTAACTCATCGAGGGGTCGCAACTAGTGTCCGAGTTCTAACAGGACATTCACGGAAAGGAGGGACCGATCCACTGTACGTTGCAGAGAATGC AGCCGACCCTGATTCAACCTTGGTGGTATACATGGGCTTGGCTACACTGCCATCCCTTGCATCAAAGCTGATCCACCATGGCCTGCCGATGAACACGCCA GCTGTTGCAGTGGAGAGAGGAACGACACCCCATCAGCGCATTGTGTTTGCAGAACTGAAGGATCTTGCTGACCAGATTGCGGTAGCCGGGTTAGTTTCTC CAACGCTAATCATAATAGGGAAGGTTGTTGCACTTTCGCCATTCTGGCCGCGTTCTTCCGAGGAATCAGTCGCTCTGGTTGAAGCCGTGTAG
AA sequence Show only first row Show all	>Lus10027819 pacid=23157089 polypeptide=Lus10027819 locus=Lus10027819.g ID=Lus10027819.BGIv1.0 annot-version=v1.0 MAVAAVYKLPHLYPSPSSPSLSLQFPQTPITVRCRSADSPFTEKHSLQQYRRDNWLYQQHQLKSEPKSDSGDEDSIRRNDIALQLPELKKLLQVLREKRN ELDESRKCGSVFLVGTGPGDPDLLTIKALRVIQKADLLLYDRLVSNDVLDLVGPGARLLYVGKTAGYHSRTQEEIHELLLSFAEAGANVVRLKGGDPLVF GRGGEEMDFLQQQGIQVKVIPGITAASGISAELGIPLTHRGVATSVRVLTGHSRKGGTDPLYVAENAADPDSTLVVYMGLATLPSLASKLIHHGLPMNTP AVAVERGTTPHQRIVFAELKDLADQIAVAGLVSPTLIIIGKVVALSPFWPRSSEESVALVEAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	3.5	0.9012
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	9.9	0.9070
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	11.0	0.9076
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	15.2	0.8821
AT5G51500			Plant invertase/pectin methyle...		Lus10031719 [exp]	19.2	0.8983
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	25.6	0.8911
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008038 [exp]	25.7	0.8706
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	28.5	0.8796
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	31.1	0.8864
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	31.4	0.8916

Compare expression of checked genes

Lus10027819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.