Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49290 56 / 1e-09 ATRLP56 receptor like protein 56 (.1) AT1G74170 51 / 7e-08 AtRLP13 receptor like protein 13 (.1) AT1G74190 51 / 7e-08 AtRLP15 receptor like protein 15 (.1) AT1G45616 51 / 1e-07 AtRLP6 receptor like protein 6 (.1) AT1G47890 49 / 3e-07 AtRLP7 receptor like protein 7 (.1) AT2G14440 47 / 1e-06 Leucine-rich repeat protein kinase family protein (.1) AT3G49750 47 / 1e-06 AtRLP44 receptor like protein 44 (.1) AT2G23950 47 / 1e-06 Leucine-rich repeat protein kinase family protein (.1) AT1G58190 47 / 3e-06 AtRLP9 receptor like protein 9 (.1.2) AT5G16900 46 / 3e-06 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005049 [exp] 150 / 7e-45 AT2G14440 44 / 7e-12 Leucine-rich repeat protein kinase family protein (.1) Lus10003387 [exp] 126 / 4e-34 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10019693 [exp] 115 / 2e-30 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10042239 [exp] 115 / 3e-30 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 114 / 1e-29 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10000228 [exp] 109 / 2e-28 AT3G05370 231 / 3e-66 receptor like protein 31 (.1) Lus10016402 [exp] 104 / 2e-26 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10004313 [exp] 102 / 2e-25 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10006825 [exp] 102 / 2e-25 AT1G47890 377 / 6e-114 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 101 / 2e-25 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 93 / 2e-22 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 60 / 8e-11 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G126900 [exp] 54 / 9e-09 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 52 / 3e-08 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.001G389100 [exp] 50 / 1e-07 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.011G021400 [exp] 50 / 1e-07 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.016G127000 [exp] 50 / 2e-07 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G164800 [exp] 49 / 3e-07 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G262800 [exp] 49 / 4e-07 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10027821 pacid=23156928 polypeptide=Lus10027821 locus=Lus10027821.g ID=Lus10027821.BGIv1.0 annot-version=v1.0 ATGAGGTCTTCTGGGCTGATAGGAACTCTACCGAAGACACTGGAAGTGGATGCAAGTGGAGACCACACTAACTTCTCCGTATATCCTCAGCTTCTGACAT TATCACTTGCATCCTGCAATCTGAGGATATTTCCTGATCTCGGTAACCAATCAAGGCTAGAATCAGTAGACCTTTCAGGTAACAATATCAATGGGGTTGT ACCTCCTTGGATTTTACCATCAACACTACATGATCTCAATCTTTCAAACGACAACCTAATTGGTGTTCAGGTACCTATTTCTCTCCCCAACCTCAGTTTC CTAGACATGCATGAAAACAAACTCCAAGGTGATAGTCCAGTCATTTCATCACCATATCTTGACTATGTGGATTACTCCTACAAGACCGGAAATTTCATCT TATACAGAGTCGAAGCCTCCACCACCGTCGCCGCCGACGACGACAATGATAATGCACCGGTAGCTCAGAGTAAACGGTTGGAGAATCGGTTTCAGTAG
AA sequence Show only first row Show all	>Lus10027821 pacid=23156928 polypeptide=Lus10027821 locus=Lus10027821.g ID=Lus10027821.BGIv1.0 annot-version=v1.0 MRSSGLIGTLPKTLEVDASGDHTNFSVYPQLLTLSLASCNLRIFPDLGNQSRLESVDLSGNNINGVVPPWILPSTLHDLNLSNDNLIGVQVPISLPNLSF LDMHENKLQGDSPVISSPYLDYVDYSYKTGNFILYRVEASTTVAADDDNDNAPVAQSKRLENRFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	0	1
					Lus10013380 [exp]	2.0	0.8780
AT2G32885			Rapid alkalinization factor (R...		Lus10000923 [exp]	4.6	0.8962
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10022259 [exp]	9.5	0.8672
AT3G14880			unknown protein		Lus10039196 [exp]	15.6	0.8595
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	18.0	0.8500
					Lus10027066 [exp]	19.7	0.8500
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	21.3	0.8500
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10017118 [exp]	21.7	0.7218
AT1G04670			unknown protein		Lus10004041 [exp]	22.8	0.8500
AT4G36590	MADS		MADS-box transcription factor ...		Lus10028490 [exp]	23.2	0.6860

Compare expression of checked genes

Lus10027821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.