Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 97 / 9e-24 ARK3 receptor kinase 3 (.1) AT1G11410 91 / 8e-22 S-locus lectin protein kinase family protein (.1) AT1G11340 82 / 1e-18 S-locus lectin protein kinase family protein (.1) AT1G65790 82 / 2e-18 ARK1 receptor kinase 1 (.1) AT4G27290 76 / 1e-16 S-locus lectin protein kinase family protein (.1) AT1G65800 75 / 4e-16 ARK2 receptor kinase 2 (.1) AT4G27300 69 / 8e-14 S-locus lectin protein kinase family protein (.1) AT1G11300 58 / 3e-10 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61610 56 / 2e-09 S-locus lectin protein kinase family protein (.1) AT1G61380 55 / 3e-09 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005053 [exp] 222 / 1e-69 AT1G11410 299 / 1e-90 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 196 / 7e-59 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 176 / 1e-51 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 162 / 2e-46 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 155 / 1e-44 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 127 / 2e-34 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10017247 [exp] 117 / 6e-31 AT1G11340 503 / 2e-166 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 116 / 2e-30 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 114 / 1e-29 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 121 / 3e-32 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 111 / 9e-29 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 110 / 1e-28 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 109 / 4e-28 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 108 / 5e-28 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 107 / 1e-27 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 104 / 3e-26 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 102 / 8e-26 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 102 / 9e-26 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 88 / 1e-20 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10027823 pacid=23157025 polypeptide=Lus10027823 locus=Lus10027823.g ID=Lus10027823.BGIv1.0 annot-version=v1.0 ATGGAAGTTGTGGTCCTTTCACCAAGTGTCATTCCAGCCTTCTGTTCCCTTTTGAATGCGATTGTTTACCTGGCTATGAACCAAGATAACCCTCGAAAGT GGGATTCGAGAGATAGGTCAGCTGGGTGTGTAAGAAAACAATCAGAATCGTCTTCTATCTGTGGGGGTGGAGAACGGTTTGTGAGAATGGAAAAAGTGAA GATACCCGATACCTCAGCAGCGGTATTGACGGTTGAAGTGAGCATGAGTAAATCGAAATGCGAAGATGTTTGCAAGAACAACTGTTCGTGCTCTGCGTAT GCTACCATCGATAACAATGGGAAAGGGACTTGTCGTTGGACATGGTACGGAGATCTCATAGATACAGTGGACTTGGCGGTCAATGCTTACGATCTATATG TTCGTGTTGATGCTATTGAATTAGGTAAGATTGACAAGGTGATGGAAACAAATGATTCTATATATGCTGTCCTTAACTTCTCTGTTCTTCCATTGACGAC CTAG
AA sequence Show only first row Show all	>Lus10027823 pacid=23157025 polypeptide=Lus10027823 locus=Lus10027823.g ID=Lus10027823.BGIv1.0 annot-version=v1.0 MEVVVLSPSVIPAFCSLLNAIVYLAMNQDNPRKWDSRDRSAGCVRKQSESSSICGGGERFVRMEKVKIPDTSAAVLTVEVSMSKSKCEDVCKNNCSCSAY ATIDNNGKGTCRWTWYGDLIDTVDLAVNAYDLYVRVDAIELGKIDKVMETNDSIYAVLNFSVLPLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027823 [exp]	0	1
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	3.0	0.6880
					Lus10003693 [exp]	12.1	0.6172
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	19.4	0.6071
AT1G30130			unknown protein		Lus10028119 [exp]	24.7	0.5985
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10016490 [exp]	27.7	0.6156
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	32.6	0.5649
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	34.5	0.6068
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	40.9	0.5870
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	43.8	0.5746
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037392 [exp]	44.2	0.5594

Compare expression of checked genes

Lus10027823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.