Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 77 / 2e-15 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G16210 70 / 5e-13 F-box family protein (.1) AT3G06240 70 / 8e-13 F-box family protein (.1) AT3G10430 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT3G21410 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT2G27520 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G22650 54 / 7e-08 ATSFL61, CEG CEGENDUO, S-LOCUS F-BOX 61, F-box and associated interaction domains-containing protein (.1) AT3G08750 54 / 8e-08 F-box and associated interaction domains-containing protein (.1) AT3G07870 54 / 1e-07 F-box and associated interaction domains-containing protein (.1) AT1G12170 53 / 2e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029725 [exp] 246 / 1e-77 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10027780 [exp] 224 / 1e-70 AT3G23880 60 / 6e-10 F-box and associated interaction domains-containing protein (.1) Lus10001105 [exp] 159 / 3e-44 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10023372 [exp] 127 / 2e-32 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10015408 [exp] 124 / 3e-31 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10028961 [exp] 118 / 3e-29 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10009424 [exp] 115 / 4e-28 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10018008 [exp] 96 / 2e-21 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10018095 [exp] 96 / 2e-21 ND 49 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318400 [exp] 94 / 5e-21 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.012G099733 [exp] 92 / 3e-20 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.005G114900 [exp] 91 / 1e-19 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.008G006900 [exp] 89 / 3e-19 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 89 / 3e-19 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G170300 [exp] 88 / 1e-18 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 84 / 1e-17 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.011G121200 [exp] 84 / 2e-17 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 81 / 1e-16 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 78 / 1e-15 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027824 pacid=23156885 polypeptide=Lus10027824 locus=Lus10027824.g ID=Lus10027824.BGIv1.0 annot-version=v1.0 ATGGTCGAGCTCGGAAGAAGAATCAAACCTTGTACCAGGAAAGGATGCTGGTTGCCGCCGGAAATAATGGTGGAGATTATGAAAAGGCTACCCACAGCAG CCTCCATCGGGCGATCTCGTTGCGTGAGCAAGTCATGCTACTTTCTTCTTTCCGATCCTAATTTCATCCGTCAAAACACCCGCTTGTTCGATGATCATGA TGATGACAAGAAGGCTAGGTTAATGATAATCTGTGACTCAGCCTCGTCGGCGGTCTCCTTATCCTACGACACTCTCCAATCCGTCTCGCCGGTATTGAAA CTGAGGTATTTAATCCCTGAGATAAAGTTGGGTCTAGAAGTTGGGGGATGCTGTGATGGAATCTTTTGCTTATACCGTGGTGATTCAGCATCCAAGATTA TCCTCTGGAATCCCACGATTTCTGATTACAGAGTTTTGCCCCCGCTTTCCCCGCTTTTAATTTTTGTGATGAAGATTGGATTTGGATACGATCCGCTCAC TAACGATTACAAAGTCGTTGCTATTGTAGAATTCGATCGAGGTAGTAATATCGGTCGTTTACCTGATCAGCCGCTTTCAGTTTACCTTTATTCTCTGAGG AACGATTCATGGAAGGCGCTGCCTGAGGTGAGGGATGCATTTATTCGGGTAGAGGTTTTCCAGTCACGTTATTCGTCAGCTAAAATCGAGAGATGTTACT GGCTGTGTTATCCGAATGACGGCCAGGAGTGGTCTATTACCTCCTTTGACTTCAGCAAACATGTGTTCAATACGGTGGTGTTGCCACCCCTGCCCATGTA TTCAGATGGTTTATCTCGGGATACCATGTCCATGTCACAAGACTACTTGGTGACTGTTACTTTCAAGCCTAGCGAGAAGACAAGTTATGTATGGTCGTTG AACTACGATCTGCTTGAACGTGGTGGCGGTGGTGATTGGATCAAGTTGTATACCGTTGTGAATTCTACCATCATGCATGAACCTTCTTCCTATGTCCCTG CAGGCATTTGGGAACATGGTAAGTGTTTTGTTATGGACTCTGAAGGACGATTGCACGTCGTTGATCAAGTCAGCGGTGGTCACGGCACTCTTCAGATCAA AGGAGAATCACCGAGTTTTTGTGAAATAAGAGCATATATACCATCGCCAATGTCGTTATCTTCTCGTAGGTGGGCAAATGAAGTTTTCTTCCAATCCAAG ACAGATCTTTCCTCCTCATCAACTATCAAAGCATACTAG
AA sequence Show only first row Show all	>Lus10027824 pacid=23156885 polypeptide=Lus10027824 locus=Lus10027824.g ID=Lus10027824.BGIv1.0 annot-version=v1.0 MVELGRRIKPCTRKGCWLPPEIMVEIMKRLPTAASIGRSRCVSKSCYFLLSDPNFIRQNTRLFDDHDDDKKARLMIICDSASSAVSLSYDTLQSVSPVLK LRYLIPEIKLGLEVGGCCDGIFCLYRGDSASKIILWNPTISDYRVLPPLSPLLIFVMKIGFGYDPLTNDYKVVAIVEFDRGSNIGRLPDQPLSVYLYSLR NDSWKALPEVRDAFIRVEVFQSRYSSAKIERCYWLCYPNDGQEWSITSFDFSKHVFNTVVLPPLPMYSDGLSRDTMSMSQDYLVTVTFKPSEKTSYVWSL NYDLLERGGGGDWIKLYTVVNSTIMHEPSSYVPAGIWEHGKCFVMDSEGRLHVVDQVSGGHGTLQIKGESPSFCEIRAYIPSPMSLSSRRWANEVFFQSK TDLSSSSTIKAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	0	1
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	2.0	0.8286
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	2.4	0.7635
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	6.0	0.7711
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	10.7	0.7323
AT1G55790			Domain of unknown function (DU...		Lus10016345 [exp]	11.6	0.7375
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	12.4	0.7561
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020026 [exp]	14.7	0.7197
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	23.2	0.7335
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10028118 [exp]	27.4	0.6630
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	28.7	0.7533

Compare expression of checked genes

Lus10027824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.