Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51370 545 / 0 Protein phosphatase 2C family protein (.1.2) AT4G38520 544 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 535 / 0 Protein phosphatase 2C family protein (.1) AT3G12620 491 / 3e-174 Protein phosphatase 2C family protein (.1.2) AT3G55050 467 / 1e-164 Protein phosphatase 2C family protein (.1.2) AT5G02760 413 / 8e-144 Protein phosphatase 2C family protein (.1) AT3G17090 409 / 7e-142 Protein phosphatase 2C family protein (.1.2) AT4G33920 378 / 7e-130 Protein phosphatase 2C family protein (.1) AT5G06750 372 / 4e-127 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 157 / 4e-43 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005054 [exp] 769 / 0 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 646 / 0 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 644 / 0 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 565 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 489 / 3e-173 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 488 / 8e-173 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 474 / 1e-167 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10037779 [exp] 444 / 8e-156 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10028408 [exp] 434 / 6e-152 AT3G51370 457 / 5e-163 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177100 [exp] 621 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 616 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 592 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 583 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 480 / 1e-169 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 479 / 2e-169 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 437 / 5e-153 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 436 / 9e-153 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 434 / 6e-152 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 386 / 8e-133 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10027825 pacid=23157054 polypeptide=Lus10027825 locus=Lus10027825.g ID=Lus10027825.BGIv1.0 annot-version=v1.0 ATGTTACCAGCATTGATGAACCTTCTGAAAGGCTGCTGCTTTCGGCCGAGGACCGGTTCGAACTCAGAAATCCACCACCACGGTCGCCAAGACGGGTTGT TGTGGTACAAAGACCATGGTCACCACGTGAATGGTGAGTTCTCCATGGCAGTAGTGCAGGCCAACAACTTGCTCGAGGACCAAAGCCAGCTCGAGTCGGG GAGTTTGAGCTCGCAGGATTCTGGTCCGTTTGGTACTTTCGTCGGCGTCTATGATGGGCATGGTGGCCCCGAGACTTCGCGCTATGTCAACGATCACCTC TTCCCCCATCTCAAACGATTTACTTCAGAGCAACAGACTATGTCAGCAGAAGTAATAAAGAAAGCATTCCAAGCAACAGAAGAAGGGTTCCTTTCTTTGG TCACAAGGCAATGGGCAATGAAGCCACAGATTGCAGCGGTTGGTTCTTGCTGCCTGGCCGGGATCATCTGCAACGAGACCCTTTACATCGCCAACTTGGG CGATTCGAGGGCCGTTCTTGGTCGGTCCGTGAAGGCAACCGGACAGGTTTTGTCCATTCAACTCTCGGCCGAGCACAATGCTTCCTATGAGTCCGTGAGA CAGGAGCTCTTCTCGTCGCACCCCGAGGACTCTCAGATTGTCGTGTTGAGGCATAACGTGTGGCGCGTGAAGGGCATTATACAGATCTCCAGATCCATAG GTGATGTATATCTTAAGAAGGCAGAGTTCAACAGGGAGCCTCTATATGCAAAGTTCAGGGTTCGAGAGCCGTTCAAGAAGCCTATATTAAGCGCTGACCC TTCTATTTCAGTACATAAGCTGCAACCGGTTGATCAGTTCATCATTTTCGCATCAGACGGGCTGTGGGAGCACTTGAGCAATCAAGAGGCAGTCGACATT GTACATAATCATCCGCGAAATGGGAGTGCAAAGAGGCTAGTGAAAGCTGCGCTGCAAGAAGCGGCAAAGAAGAGGGAAATGAGGTACTCGGACTTGAAGA AGATAGACCGTGGAGTCCGACGCCATTTCCACGACGACATCACCGTGGTTGTGGTTTTCCTTGACACGAACCTTGCGAACCGTGCCACCACCTATGGTGG TGGTCCTGGCTTGGGAAACAAGGTAGTTAATGTATCGGTGAGGGGTGGTGAAATGAGTCTCCCTTCAAACACGTTGGCGCCGGGCATCACTTCAATGCCT TGGTAG
AA sequence Show only first row Show all	>Lus10027825 pacid=23157054 polypeptide=Lus10027825 locus=Lus10027825.g ID=Lus10027825.BGIv1.0 annot-version=v1.0 MLPALMNLLKGCCFRPRTGSNSEIHHHGRQDGLLWYKDHGHHVNGEFSMAVVQANNLLEDQSQLESGSLSSQDSGPFGTFVGVYDGHGGPETSRYVNDHL FPHLKRFTSEQQTMSAEVIKKAFQATEEGFLSLVTRQWAMKPQIAAVGSCCLAGIICNETLYIANLGDSRAVLGRSVKATGQVLSIQLSAEHNASYESVR QELFSSHPEDSQIVVLRHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRVREPFKKPILSADPSISVHKLQPVDQFIIFASDGLWEHLSNQEAVDI VHNHPRNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDTNLANRATTYGGGPGLGNKVVNVSVRGGEMSLPSNTLAPGITSMP W

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38520			Protein phosphatase 2C family ...		Lus10027825 [exp]	0	1
AT4G38520			Protein phosphatase 2C family ...		Lus10005054 [exp]	1.0	0.9274
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	23.2	0.8956
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	27.5	0.8895
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	27.6	0.8880
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	32.9	0.8622
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	38.3	0.8859
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	44.8	0.8898
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	46.0	0.8864
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10013962 [exp]	46.7	0.8841
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	52.7	0.8817

Compare expression of checked genes

Lus10027825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.