Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20920 255 / 1e-84 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005055 [exp] 467 / 5e-168 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 467 / 5e-168 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10024004 [exp] 311 / 3e-106 AT2G20920 332 / 8e-115 Protein of unknown function (DUF3353) (.1) Lus10025079 [exp] 289 / 1e-97 AT2G20920 333 / 5e-115 Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 50 / 3e-07 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177300 [exp] 299 / 8e-102 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.009G137600 [exp] 291 / 1e-98 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) Potri.012G057700 [exp] 46 / 2e-05 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.019G018300 [exp] 43 / 0.0002 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10027826 pacid=23156960 polypeptide=Lus10027826 locus=Lus10027826.g ID=Lus10027826.BGIv1.0 annot-version=v1.0 ATGGCTGCCAACCTCTCCCTCCGGCCAAATCACCACCGCCTCTCTCCCTCCGGCGCCTCTCCTTCCTTCCTCCGGCCTCCGCACTTCTCCATACCAGAGT TCGCATCCTACCGTTACAGGAGATCAAATTTTGCTCTACCGCTGCGACGGATGCTGGCCAGAGCCAGAAGCTCCGAGGCCGACGATTCGGCGCAGTTCGA GATGTCTCTGGAGAACGCGCGCGCTCTACTCGGAGTCTCCACCGGCGCTTCCTTCGACGACGTGCTTCGCGCCAAGAACTCGATCCTCTCCACCTGCAAA GACGAGCCGGACGCGATTGCGCAGGTTGAGGCCGCATACGACATGATACTGATGCAAAGCCTATCCCAACGCCGAGCTGGGAAAGTCGCAAGCAGTCGAA TACGTTACGCTGATGTCAAGCCCGTAACTGCTCCAGGGATGATGGGATTGATGCCTAAGTGGCTACGAACCACAGTCAAGAACGCTCCGGTCTCGGTAGA GTCGCCAGTAGGTACTACCGATTTGGGGATACAAGCCGGGGTCTATGGCGCTCTAATAGTCCTGACTTACGCCAATGGGACCTCGGTTATGGTTCCCAAC ACCGTAGCTGCTGATGTCCCAGGTCTGCTCTTGGCAACAAGCTTTGGAGCTTCGTTGTACTTCATGAGCAAGAAGAAGGTGAAACTAGGTAAGGCGGCTG TGATCACTTTGGGAGGCCTTGTGGCTGGTGCGGTGGTGGGTTCAGCGGTCGAGAGCTGGCTACAGGTCGACATTGTCCCGTTTCTTGGTCTACACTCTCC CGCTGCTGTAATTAGCGAGTTCATCATAGTCTCGCAGTTTTTGGTCTCAGTTTACCTAAGGTGA
AA sequence Show only first row Show all	>Lus10027826 pacid=23156960 polypeptide=Lus10027826 locus=Lus10027826.g ID=Lus10027826.BGIv1.0 annot-version=v1.0 MAANLSLRPNHHRLSPSGASPSFLRPPHFSIPEFASYRYRRSNFALPLRRMLARARSSEADDSAQFEMSLENARALLGVSTGASFDDVLRAKNSILSTCK DEPDAIAQVEAAYDMILMQSLSQRRAGKVASSRIRYADVKPVTAPGMMGLMPKWLRTTVKNAPVSVESPVGTTDLGIQAGVYGALIVLTYANGTSVMVPN TVAADVPGLLLATSFGASLYFMSKKKVKLGKAAVITLGGLVAGAVVGSAVESWLQVDIVPFLGLHSPAAVISEFIIVSQFLVSVYLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20920			Protein of unknown function (D...		Lus10027826 [exp]	0	1
AT2G20920			Protein of unknown function (D...		Lus10005056 [exp]	2.0	0.8888
AT4G01935			unknown protein		Lus10010062 [exp]	5.4	0.8933
AT5G12470			Protein of unknown function (D...		Lus10016379 [exp]	5.8	0.8673
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	7.3	0.8810
AT2G20920			Protein of unknown function (D...		Lus10005055 [exp]	8.8	0.8512
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013434 [exp]	8.9	0.8851
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	10.2	0.8788
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	13.9	0.8866
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10036705 [exp]	15.7	0.8526
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	17.7	0.8870

Compare expression of checked genes

Lus10027826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.