Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23590 326 / 1e-111 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G76700 65 / 2e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 62 / 1e-10 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G24120 58 / 3e-09 ARL1 ARG1-like 1 (.1) AT5G48030 58 / 4e-09 GFA2 gametophytic factor 2 (.1) AT4G39150 57 / 5e-09 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G16680 57 / 8e-09 Chaperone DnaJ-domain superfamily protein (.1) AT2G21510 56 / 9e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59980 56 / 1e-08 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G18140 56 / 2e-08 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005058 [exp] 530 / 0 AT3G59040 623 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013198 [exp] 59 / 2e-09 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10041972 [exp] 57 / 7e-09 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 57 / 8e-09 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10029202 [exp] 57 / 9e-09 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10042774 [exp] 57 / 1e-08 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028809 [exp] 56 / 2e-08 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 56 / 2e-08 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10035855 [exp] 55 / 3e-08 AT5G48030 524 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138100 [exp] 295 / 2e-99 AT5G23590 255 / 2e-84 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G260400 [exp] 63 / 6e-11 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 63 / 9e-11 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.010G036200 [exp] 56 / 1e-08 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.002G074600 [exp] 56 / 1e-08 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.004G158300 [exp] 56 / 1e-08 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G185800 [exp] 56 / 2e-08 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G119800 [exp] 56 / 2e-08 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.008G193500 [exp] 55 / 2e-08 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.009G065500 [exp] 55 / 3e-08 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027828 pacid=23157102 polypeptide=Lus10027828 locus=Lus10027828.g ID=Lus10027828.BGIv1.0 annot-version=v1.0 ATGGAAGTCGACCACTACGAGGTCCTAGGGTTACAATCGGGGGAGGAAGGGGCAAAGCTCACAGAGAAAGAGATCTCCAAGGCATACAAACTGAAAGCCT TGGAATTGCACCCTGACAAGAGGCTGAATGACCCGAACGCCCACGACAACTTCCAGAAGCTGAAAAACTCGTACGAGATCCTCAAAGACGAGAAGGCTCG TAAGCTATTTGACGCTTTGCTTCGTGTGAAGCGGGAACAGCAAGTGCGGAGGTCTCGTCAGGATTCGAAGCGGAGGAAGATGGTCTCCGATCTCGAAGGG AGAGAACGAGCTGCTGCTGCTTTTGGTGATTACACTCCTGATCCTGATTCAGTGGCTAGAGCGGAGGAGGAGAGGATTGCTAGGAAGCTTAAGGAGGAAA TCGACAGGATTCGCGCAATGCATTCGGGTAAAGGAGCTTCCGAGAAGAGGAAGGAAAAGGAAAGGATTAAGAAAGGGAGTGAAGCCGCTCCTTCGGACAT GGAGAGGGATAAAGCACTGAAAGTGTCTTGGGAGAGAATTGGTGAAGGATATGATGCGGAGAAGCTTAGAGAGCTGTTTTCAGAGTTCGGTGAGGTTGAC GATGTCTTGATTAAGAGCTCGAAGAAGAGAGGTTCGGCTCTCGTTGTTATGTCTACGAAAGACGCTGCGGTTGCTGCTACTGGAAGTGTACTAGGGCATC TATCAAATCCTCTACTTGTCTTACCGGTTCAACGAAGCAAAGTAGCAGATTATCCTTCAAGCTCCCAGAAGTCGGCCGAATTCGAGGGAATGAGTAATCT GGTTGGGGCTGGATACAAGTCTTTTGAAGATTCTGTATTTGAGAAGCTTCAAAAGCAAGAAACCAGAAGTGATGGCGCACAGGCCTCCCCGAACGATGAA CTCGTGGCTCGGGATACCAGAAGTGAAGGTGCACAGGCCTACCATTCTAGCTGGAAAACTACAGAGAGTGGAATGCTATTACTAAGCAGGGCACTCTCGA GTTGA
AA sequence Show only first row Show all	>Lus10027828 pacid=23157102 polypeptide=Lus10027828 locus=Lus10027828.g ID=Lus10027828.BGIv1.0 annot-version=v1.0 MEVDHYEVLGLQSGEEGAKLTEKEISKAYKLKALELHPDKRLNDPNAHDNFQKLKNSYEILKDEKARKLFDALLRVKREQQVRRSRQDSKRRKMVSDLEG RERAAAAFGDYTPDPDSVARAEEERIARKLKEEIDRIRAMHSGKGASEKRKEKERIKKGSEAAPSDMERDKALKVSWERIGEGYDAEKLRELFSEFGEVD DVLIKSSKKRGSALVVMSTKDAAVAATGSVLGHLSNPLLVLPVQRSKVADYPSSSQKSAEFEGMSNLVGAGYKSFEDSVFEKLQKQETRSDGAQASPNDE LVARDTRSEGAQAYHSSWKTTESGMLLLSRALSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10040259 [exp]	1.4	0.9301
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	1.7	0.9194
AT3G11810			unknown protein		Lus10037134 [exp]	2.0	0.9297
AT2G35330			RING/U-box superfamily protein...		Lus10004557 [exp]	2.4	0.9128
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	6.3	0.9104
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	6.7	0.9044
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	10.7	0.9134
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	12.0	0.8983
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	14.4	0.9041
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	14.5	0.9124

Compare expression of checked genes

Lus10027828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.