Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59040 695 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 182 / 1e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 175 / 5e-47 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G41720 171 / 9e-46 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31400 168 / 2e-44 GUN1 genomes uncoupled 1 (.1) AT1G12775 164 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 160 / 3e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 159 / 7e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 158 / 3e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63130 156 / 4e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005058 [exp] 794 / 0 AT3G59040 623 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 180 / 9e-49 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 175 / 4e-47 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 174 / 2e-46 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 174 / 2e-46 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 171 / 2e-45 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 170 / 3e-45 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 165 / 4e-44 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027552 [exp] 162 / 6e-44 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G220300 [exp] 734 / 0 AT3G59040 811 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G257300 [exp] 194 / 8e-55 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 191 / 1e-53 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 183 / 7e-51 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 178 / 3e-49 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G242500 [exp] 178 / 5e-49 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074700 [exp] 177 / 6e-49 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 177 / 2e-48 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 177 / 4e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 176 / 5e-48 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027829 pacid=23156906 polypeptide=Lus10027829 locus=Lus10027829.g ID=Lus10027829.BGIv1.0 annot-version=v1.0 ATGCAGAGGAGGAAGAAAGTGGAAGTGTTCAAGGATTCTGCCGATGAAGCAGATCAGAAGAACTGGAGGAGACTGATGAGTCAAATTGAGGATACTGGCT CTGCAGTTTCGGTGCTCAGAGGCGAAAAAAAGGTTCATAACCAGGGGCTCGATCGACGTCTGGTTCTGGGTACTCTTGTGAGATTCAAACAGCTTAAGAA ATGGAACCTTGTTGTTGAGATTTTGGAATGGCTTCGGTTGCAGCAGTGGTGGGATTTCAATGAAAGGGATTTCATTCTGCTGATTACAGCTTACGGGAAA CAAGGCGACTTCAACAGAGCTGAGCAAGTTCTATCAGTCATGAATAAGAAAGGTTACCAACCAAACGTTGTATCTCACACGGCACTTATGGAGGCATATG GTAAAGGAGGCAAACATAAGAACGCTGAAGCCATTTTTCGAAGGATGAAGGCCTTGGGACCTGAACCTTCTGCTTTAACATATCAGATCATACTTAACAT GTTTGTCCAGGCAAACAAGTTCGAAGAAGCTGAAGAGGTTTTCCAGTCTCTTTTGAATGAGGAAAAACCACCTCTGAATCCAGACCAACGGATATTTCAA TTGATGATATACATGTATAAGAAGGCTGGGAACTACGAACAGGCTCGTAAGCTTTTCGGAATTATGGCAGAGCGTGGAGTTCCACAGTCAACTATCACTT ACAATAGTCTCATGTCATTTGAAACTAATTACAAGGAGGTCTCCAGGATCTATGATCAGTTGCAAAGATCTGGTCTTCAACCTGATGTTGTGAGCTATTC GTTACTCATTAACGCCTATGGCAAAGCTCGGAGAGAAGATGAAGCCTTAGCTGTTTTTGAGGATATGCTGGATGCTGGTGTCAGGCCATCGCGGAAAGCT TATAATATTTTGCTCGATGCATTTGCTATCTCTGGAATGGTAGAGCAGGCTAGGATAGTGTTCAAGAGCATGAGAAGAGACAGAGTCACACCAGATATCT GTTCTTACGCAACAATGCTATCAGCATACGTCAACTCTGCTGACATGGACGGCGCAGAGAAGTTCTTCAATCGGATCAAACAAGACGGACTAGAAAACGA CGTCGTCACATACGGGACGCTGATAAAAGGGTATGCAAAGGCGGCCGATATCGAGAAAATGATGGGGAGGTTCGAAGAAATGCAGTCTGCTGGTGTCAAA CCAAACCAGACCATCTTCACAACCATAATGGATGCTCAAGGTAAAACCGACTTTTCCAGTGCTGTTACTTGGTACAGGGAGATGGAGTCCCGTGGAATTC CTCCCGATCAGAAGGCCAAAAATGTCCTTCTGTCTCTGGCCAAGACGGAGGAGGATCAAAAGGAAGCTGGTCGAGTTGTCGGGATTTCGAATAACTCTAC GAGCTCGGTGTCCACTGACGGGACGTCTGGGTTTGCTTATGAATATGATGAAGATGAAGATGATGATGATGACGACTCAAACAACGAGGCGGTTATCAGC GAAGAACAGGAAGAAAGATTGATACTTTCGAGCCGAAATGTAGGACATAGTGTGGCTGGGCTGCATAATCTGCCTGTTGTTCATCTGTAA
AA sequence Show only first row Show all	>Lus10027829 pacid=23156906 polypeptide=Lus10027829 locus=Lus10027829.g ID=Lus10027829.BGIv1.0 annot-version=v1.0 MQRRKKVEVFKDSADEADQKNWRRLMSQIEDTGSAVSVLRGEKKVHNQGLDRRLVLGTLVRFKQLKKWNLVVEILEWLRLQQWWDFNERDFILLITAYGK QGDFNRAEQVLSVMNKKGYQPNVVSHTALMEAYGKGGKHKNAEAIFRRMKALGPEPSALTYQIILNMFVQANKFEEAEEVFQSLLNEEKPPLNPDQRIFQ LMIYMYKKAGNYEQARKLFGIMAERGVPQSTITYNSLMSFETNYKEVSRIYDQLQRSGLQPDVVSYSLLINAYGKARREDEALAVFEDMLDAGVRPSRKA YNILLDAFAISGMVEQARIVFKSMRRDRVTPDICSYATMLSAYVNSADMDGAEKFFNRIKQDGLENDVVTYGTLIKGYAKAADIEKMMGRFEEMQSAGVK PNQTIFTTIMDAQGKTDFSSAVTWYREMESRGIPPDQKAKNVLLSLAKTEEDQKEAGRVVGISNNSTSSVSTDGTSGFAYEYDEDEDDDDDDSNNEAVIS EEQEERLILSSRNVGHSVAGLHNLPVVHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	0	1
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	2.4	0.9110
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10026364 [exp]	3.9	0.8992
AT1G52670			Single hybrid motif superfamil...		Lus10011480 [exp]	4.0	0.9056
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	4.9	0.8969
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	6.6	0.9229
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10014230 [exp]	9.6	0.8372
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	10.2	0.8806
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10036468 [exp]	10.3	0.9225
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Lus10023384 [exp]	11.2	0.8887
AT2G17695			unknown protein		Lus10041839 [exp]	15.0	0.8918

Compare expression of checked genes

Lus10027829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.