Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16940 470 / 2e-160 Splicing factor, CC1-like (.1.2.3) AT5G09880 411 / 1e-138 Splicing factor, CC1-like (.1) AT4G34110 56 / 4e-08 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 56 / 7e-08 PAB3 poly(A) binding protein 3 (.1) AT1G49760 55 / 1e-07 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G48920 52 / 6e-07 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT5G16260 51 / 1e-06 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G30480 48 / 1e-05 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT3G11400 47 / 1e-05 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT2G35410 47 / 2e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005059 [exp] 702 / 0 AT2G16940 534 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 549 / 0 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 543 / 0 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10002093 [exp] 410 / 7e-138 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 400 / 5e-134 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10010042 [exp] 65 / 1e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 64 / 3e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 59 / 9e-09 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 59 / 9e-09 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137200 [exp] 498 / 2e-171 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 488 / 2e-167 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.005G148100 [exp] 409 / 1e-137 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 403 / 3e-134 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.014G025400 [exp] 64 / 2e-10 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 63 / 3e-10 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.001G304000 [exp] 59 / 8e-09 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 57 / 2e-08 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.004G229732 [exp] 57 / 3e-08 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Potri.011G050400 [exp] 56 / 4e-08 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027830 pacid=23156871 polypeptide=Lus10027830 locus=Lus10027830.g ID=Lus10027830.BGIv1.0 annot-version=v1.0 ATGGATTTTGATGAGTATGATTACCTGGAAAAGATGGTTGAGAACCCCGAACCTGTAAAGGTGAAGGAAACTGCTAACGGGAGTGAGTCTTTAAAATCTG GAGAGAGAGAACGTAGTCGGGGCTCGAAGCATAGAAGTGATGACAAGGAAGATGAGGATGATGACCACCGTCGTTCGAAGAGATCGAAATCAAGAGATGA TACTCGCGATCGTGATCGCCACAGAGAAAGAGGTTCATCCAAACATATCTCAGGATCTGGAGAAGGCGACAGGGATCGTCACAGGAGTAGCCGTGAAAGC AGAGATAAGGACAAGGACAGGGATAGGGAGGAACGAAATGGAAAGGATAGAGACCGAGAACGAGAGAGGGACCGAGGTCATGGCTGGGAATTGGAGAAGG AGAAGACTGACAGAGAGCGAGTACGTCGGAGTGAGAATCGTTCTGAAAGGGAGAAAAGTAAGGACAGAGAGCCTAAAGAACGGGAAACTGAGATAAATTT CAAAGATCGAGACAGGGGAAATAGAAGGAAAAAGGAGGATGGTACAGAGCCTGAAGCTGATCCTGAGCGAGATCAGAGGACCGTATTTGCCTATCAGATA TGTTTGAAGGCTGATGAAAGAGATGTTTATGAGTTCTTTTCAAGGGCCGGAAAGGTACGGGATGTTCGTCTCATAATGGATCGAAATTCCAGACGGTCAA AGGGAGTCGGGTATATTGAATTCTATGATGTGATGTCTGTCCCTATGGCAATTGCACTGTCTGGGCAGCCTCTTCGCAATGTCCCAGTGATGGTGAAACC TTCGGAGGCTGAGAAGAATCTTGTCCAGTCCACTGCAGCTGCAGCAATGGGCCCGGGTGGAGGCATCGGTCCTTATTCAGGAGGTGCTAGAAGGTTGTAT GTTTTTGAACCATTCGGTGCCGTAGAGTTGGTTCAACTGCCTCTTGACGAGACTGGACAGTGCAAAGGTTTCGGTTTTGTTCAGTTTGCTCGTTTAGAGG ATGCTAGGAATGCTCTAAATTTGAATGGACAAGTCGAGATTGCTGGTCGGCCTATCAAGGTGTCATCTGTCACTGATCAAACTGGTCAAGAAGGGGCAAC GGGCGATTTTGACGACGACGAGGGTGGCGGATTGGCACTGAATGCACGTTCCCGGGCAATGTTGATGCAAAAGTTAGATCGAAGTGGCACTGCCTCAAGT ATCACTTTACCAGGACCACCGGCTGGGATTCCTCAGGGTGTTGCTTCTCTCCTGCCCCCTGGGCTACCCGGATCGGGTCTTCAACTCCCTGTAGCTGCAA TTCCTGCTCTCGATGCAGTTGGTGTCCCGAGCGAATGTCTATTGTTAAAGAATATGTTTGATCCCCAATCAGAGATGGAAGACGATTTTGATTTAGATAT CAAGGAAGATGTTCAAGATGAATGCTCAAAATATGGAACCTTGAGGCATATCTTTGTGGACAAAAACAGCATGGGTTTGGTGTATCTACGGTTCGAGAAT ACGCAATCTGCAATGGGAGCTCAGCGTGCACTCCATGGAAGGTGGTTTGCTGGGAAGATGATCACAGCAACATACATGGTACCTCAGGTCTATGAAGAGA AGTTTGCAGATAGTGTAATATAG
AA sequence Show only first row Show all	>Lus10027830 pacid=23156871 polypeptide=Lus10027830 locus=Lus10027830.g ID=Lus10027830.BGIv1.0 annot-version=v1.0 MDFDEYDYLEKMVENPEPVKVKETANGSESLKSGERERSRGSKHRSDDKEDEDDDHRRSKRSKSRDDTRDRDRHRERGSSKHISGSGEGDRDRHRSSRES RDKDKDRDREERNGKDRDRERERDRGHGWELEKEKTDRERVRRSENRSEREKSKDREPKERETEINFKDRDRGNRRKKEDGTEPEADPERDQRTVFAYQI CLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLRNVPVMVKPSEAEKNLVQSTAAAAMGPGGGIGPYSGGARRLY VFEPFGAVELVQLPLDETGQCKGFGFVQFARLEDARNALNLNGQVEIAGRPIKVSSVTDQTGQEGATGDFDDDEGGGLALNARSRAMLMQKLDRSGTASS ITLPGPPAGIPQGVASLLPPGLPGSGLQLPVAAIPALDAVGVPSECLLLKNMFDPQSEMEDDFDLDIKEDVQDECSKYGTLRHIFVDKNSMGLVYLRFEN TQSAMGAQRALHGRWFAGKMITATYMVPQVYEEKFADSVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	2.0	0.8361
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	4.9	0.8049
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	4.9	0.7998
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	8.6	0.8168
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	10.2	0.8145
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	10.5	0.7819
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	11.2	0.7844
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	13.0	0.7842
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	18.7	0.7866
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	22.6	0.8024

Compare expression of checked genes

Lus10027830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.