Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35160 1103 / 0 Endomembrane protein 70 protein family (.1.2) AT4G12650 858 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 540 / 0 Endomembrane protein 70 protein family (.1.2) AT2G24170 538 / 0 Endomembrane protein 70 protein family (.1) AT3G13772 536 / 0 AtTMN7 transmembrane nine 7 (.1) AT5G10840 536 / 0 Endomembrane protein 70 protein family (.1) AT1G55130 525 / 5e-180 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT1G14670 267 / 7e-81 Endomembrane protein 70 protein family (.1) AT2G01970 266 / 2e-80 Endomembrane protein 70 protein family (.1) AT1G08350 256 / 8e-77 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005060 [exp] 1296 / 0 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 880 / 0 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 793 / 0 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000222 [exp] 542 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 537 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 537 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 536 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10026254 [exp] 536 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031308 [exp] 249 / 8e-74 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113500 [exp] 1139 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G189300 [exp] 1136 / 0 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 862 / 0 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 854 / 0 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 551 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 550 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 542 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 534 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G264500 [exp] 531 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 253 / 1e-75 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10027831 pacid=23157023 polypeptide=Lus10027831 locus=Lus10027831.g ID=Lus10027831.BGIv1.0 annot-version=v1.0 ATGCATTCTTCCGCTCGACTGGAGATCTGGATCTGTGTCCTTCTGCTAGCTTTCCAATCGGGATATGGATTCTATCTTCCCGGCAGCTACCCTCACAAGT ACGGCATCGGCGATCCTCTGTCCGTGAAAGTGAACTCCCTCACTTCGATCGAAACCGAGATTCCGTTCAGCTACTACAGTTTGCCATTCTGCAAGCCGCC TGAAGGCGTGAAAGACAGCGCCGAAAATCTCGGCGAGCTTCTGATGGGAGATCGGATCGAGAACTCTCCTTATAAGTTCAAGATGTACACGAACGAGTCA CAGATCTTCCTCTGCCAATCGGCTCCTTTGTCAGGTGATGATTTCAAGCTGATGAAGAAGAGGATCGACGAGATGTACCAGGTGAATTTGATTCTTGATA ATCTGCCTGCGATTAGGTATACTAATAAGGAGTCGTTTATGGTGAGATGGACTGGCTATCCCGTTGGAATTAAGGTTCAGGACGCTTATTACATGTTTAA TCATTTGAAGTTCACTGTTCTTGTTCATAAGTATGAGGAAGCCAACATGGCTCGTGTTATGGGGACTGGTGATGCTGCTGAGATGATCCCCAACACGGCT GGATCATCGGATGAGACGCCTGGTTATATGGTGGTCGGATTCGAGGTTGTTCCTTGTAACGTTGTGCACGATCCGAAATCGTTGAAGAAGGATTTGAGGA TGTATGGGAAGTATCCTTCGAATATCAAGTGTGATCCCACCACTGTGGCATTGCCAATCAAGGAGAACGAACCGATGGTTTTCACTTACGAGGTCACATT CGAGGAGAGTGATATCAAGTGGCCTTCGAGATGGGATGCGTATTTGAAAATGGAAGGTTCGAAGGTCCACTGGTTCTCGATCATGAACTCGATTATGGTG ATTACTTTCCTTGCAGGCATCGTACTCGTGATCTTTTTGAGAACTGTCAGGCGCGATCTTACTCGTTACGAGGAGCTGGATAAGGAGATGAATGAGGAGC TCTCCGGATGGAAGCTTGTCGTAGGGGATGTATTCCGTGCCCCTTCGAATTCGGCTCTTCTCTGTGTTATGATCGGTAATGGTGTTCAGATTCTCGGAAT GGCCATCGTGACCGTCCTATTCGCAGCTCTCGGATTCATGTCTCCCGCATCTCGCGGAACTCTTTTGACTGGGATGCTAATCTTCTTCATGATCCTCGGA ATTGCTGCCGGATATGCAGCGGTTCGACTGTGGAGAACGATGGGGTCCGGTGATGGAAAGGGATGGGCTTCGGTTTCGTGGAAAGTCGCCTGTTTCTTCC CTGGCATCGCGTTCGTAATCCTAACCACATTGAACTTCCTCCTATGGCATAGTAATTCCACCGGTGCTATCCCGTTCTCGTTATTCGTGGTCCTGATCCT TCTCTGGTTCTGCATCTCGGTTCCCTTGACACTAATCGGAGGATACTTCGGCGCCAAGGCGCCTCACATCGAGTATCCGGTTCGTACGAACCAGATTCCT CGCGAAATCCCGGCTCAAAAGTACCCGTCTTGGCTGCTAGTTCTCGGCGCAGGGACTCTGCCGTTCGGTACGCTCTTTATTGAGCTCTTCTTTATCATGT CCAGCATATGGATGGGCCGTGTGTACTACGTGTTTGGGTTCCTTCTGATCGTGTTCATACTTCTTGTCGTGGTTTGTGCCGAAGTTTCGCTTGTGTTGAC GTACATGCATCTGTGTGTTGAGGATTGGAAATGGTGGTGGAAATCTTTCTTTGCGTCGGGTTCGGTCGCCATTTACATCTTCTTGTACTCCATAAACTAC CTGGTTTTCGATCTTAAGAGCCTCAGTGGGCCCGTCTCGGCGACGCTCTACCTTGGATACTCGCTGCTGATGGTTTTGGCTATCATGCTGGCTACCGGTA CGGTTGGATTCCTCTCATCGTTCTGGTTCGTGCATTACTTATTCTCGTCGGTAAAGCTCGATTGA
AA sequence Show only first row Show all	>Lus10027831 pacid=23157023 polypeptide=Lus10027831 locus=Lus10027831.g ID=Lus10027831.BGIv1.0 annot-version=v1.0 MHSSARLEIWICVLLLAFQSGYGFYLPGSYPHKYGIGDPLSVKVNSLTSIETEIPFSYYSLPFCKPPEGVKDSAENLGELLMGDRIENSPYKFKMYTNES QIFLCQSAPLSGDDFKLMKKRIDEMYQVNLILDNLPAIRYTNKESFMVRWTGYPVGIKVQDAYYMFNHLKFTVLVHKYEEANMARVMGTGDAAEMIPNTA GSSDETPGYMVVGFEVVPCNVVHDPKSLKKDLRMYGKYPSNIKCDPTTVALPIKENEPMVFTYEVTFEESDIKWPSRWDAYLKMEGSKVHWFSIMNSIMV ITFLAGIVLVIFLRTVRRDLTRYEELDKEMNEELSGWKLVVGDVFRAPSNSALLCVMIGNGVQILGMAIVTVLFAALGFMSPASRGTLLTGMLIFFMILG IAAGYAAVRLWRTMGSGDGKGWASVSWKVACFFPGIAFVILTTLNFLLWHSNSTGAIPFSLFVVLILLWFCISVPLTLIGGYFGAKAPHIEYPVRTNQIP REIPAQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVFILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSINY LVFDLKSLSGPVSATLYLGYSLLMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	1.0	0.9637
AT5G52180			unknown protein		Lus10015101 [exp]	2.4	0.8850
AT3G58050			unknown protein		Lus10017239 [exp]	4.9	0.8793
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	6.3	0.8321
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	7.7	0.8641
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	8.8	0.8555
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	9.4	0.8681
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	12.7	0.8201
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	13.0	0.8610
AT3G18310			unknown protein		Lus10023992 [exp]	14.5	0.8448

Compare expression of checked genes

Lus10027831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.