Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75990 684 / 0 PAM domain (PCI/PINT associated module) protein (.1) AT1G20200 682 / 0 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005061 [exp] 833 / 0 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10034469 [exp] 792 / 0 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10025072 [exp] 320 / 4e-105 AT1G75990 338 / 3e-112 PAM domain (PCI/PINT associated module) protein (.1) Lus10022337 [exp] 69 / 4e-12 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10041586 [exp] 68 / 9e-12 AT5G14250 450 / 2e-154 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176600 [exp] 711 / 0 AT1G20200 680 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.009G136900 [exp] 706 / 0 AT1G20200 676 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017700 [exp] 514 / 2e-180 AT1G20200 554 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Potri.002G017800 [exp] 439 / 8e-151 AT1G75990 475 / 5e-165 PAM domain (PCI/PINT associated module) protein (.1) Potri.017G066300 [exp] 71 / 5e-13 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.001G334200 [exp] 71 / 7e-13 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08375 [flax] [poplar] Rpn3_C Proteasome regulatory subunit C-terminal CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10027832 pacid=23156909 polypeptide=Lus10027832 locus=Lus10027832.g ID=Lus10027832.BGIv1.0 annot-version=v1.0 ATGGCAACTGAAGATATTGATATGAAGGAGGTTACTGCCCCCGCTGCGGCGGAAGCTCCGTCGGATTCCATTGTTGCAGCCGCTCCGTCGGTTCTTCAAC ATTTGAAGGAGATTGCTTCGTTGATTGAGACCGGGGCGTATGCTCGTGAGGTTCGAAGGATTGCGCGGGCAATCAGGCTGACAATGGCGCTAAGGAGGAA GCTGAAGACCTCGATTGTCTCGGCTTTCCTTAACTTTGCGCTTACTCCTGGATCGGAGCCTCATGTTCGTCTGTGCTCTTATCTTCCCAAGGAGGATGAC CATGAGATGGAAGTTGATACTGCAACGTCTGTGGTTCAGGCTTCTGTGAAGCATTCCCTACCTGAGCTGGAGATCTATTGCTACTTACTGGCTAAACCTT GTTCATCAGCTAGCATTGCAAAGCTTAAGAACCTGAACAGAAGGACTGTTGATGTTTTAGCATCCAGGCTTTTCTTCTACTACTCCCTTAGCTACGAGCT CACTGGTGATCTTGCTGAGATAAGAGGAAACCTTCTTGCACTCCACCGGATTGCAACATTGCGCCGTGATGAGCTGGGTCAGGAAACCCTTCTCAATCTG CTGCTGCGCAATTACCTCCACTACAATTTGTATGATCAAGCAGAAAAGCTGAGGTCCAAAGCCCCAAGATTTGAAGCTCATTCGAATCAGCAGTTCTGTC GGTATCTATTTTACCTTGGAAAGATTCGGACGATTCAGTTGGAATACACAGACGCCAAGGAGTCCCTCCTTCAAGCTGCTCGAAAAGCCCCCATTGCAGC CCTTGGTTTCCGAGTTCAATGCACCAAATGGGCTGTTATCGTCAGATTGCTTCTAGGAGAGATTCCTGAAAGGACCGTTTTTATGCAGAAAGGCATGGAA AATGCTCTGAGGCCGTACTTCGAGTTGACCAATGCTGTACGGATAGGCGATCTGGAGCTCTTCAAATCTGTAGCCGAGAAGTTCTCGACCACTTTCAGTT CGGACCGGACCCACAACCTGATTGTTCGTCTGAGGCATAACGTCATAAGGACAGGACTCAGAAACATCAGCATCTCTTACTCTCGAATCTCGTTGGCAGA TGTCGCCAAGAAGCTGAGGCTGGATTCACCGAACCCTGTTGCTGATGCCGAGAGCATCGTAGCTAAGGCGATCCGAGATGGCGCCATCGATGCAACTATC GATCACAAGAACGGGTGGATGGTATCGAAGGAGACTGGGGACATCTACTCGACAAACGAGCCTCAAATGGCGTTCAACTCCAGGATCGCTTTCTGCCTCA ATATGCATAATGAGGCTGTCCGGGCACTTCGGTTCCCTCCAAACTCCCGCGAGGAGAAGGAAAGCGCGGAGAAGAGAAGGGAGAGACAGCAGCAGGAGCA GGAGCTTGCTCAACACATTGCTGAGGAAGATGACGACGAGTTCTGA
AA sequence Show only first row Show all	>Lus10027832 pacid=23156909 polypeptide=Lus10027832 locus=Lus10027832.g ID=Lus10027832.BGIv1.0 annot-version=v1.0 MATEDIDMKEVTAPAAAEAPSDSIVAAAPSVLQHLKEIASLIETGAYAREVRRIARAIRLTMALRRKLKTSIVSAFLNFALTPGSEPHVRLCSYLPKEDD HEMEVDTATSVVQASVKHSLPELEIYCYLLAKPCSSASIAKLKNLNRRTVDVLASRLFFYYSLSYELTGDLAEIRGNLLALHRIATLRRDELGQETLLNL LLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCTKWAVIVRLLLGEIPERTVFMQKGME NALRPYFELTNAVRIGDLELFKSVAEKFSTTFSSDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVAKAIRDGAIDATI DHKNGWMVSKETGDIYSTNEPQMAFNSRIAFCLNMHNEAVRALRFPPNSREEKESAEKRRERQQQEQELAQHIAEEDDDEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10027832 [exp]	0	1
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	2.0	0.9328
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	2.8	0.9152
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	5.3	0.9075
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	6.0	0.9204
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	7.4	0.9001
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10005061 [exp]	16.7	0.9026
AT5G06590			unknown protein		Lus10021091 [exp]	17.2	0.8818
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	17.3	0.9093
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	19.7	0.9177
AT5G42960			unknown protein		Lus10007162 [exp]	21.4	0.9082

Compare expression of checked genes

Lus10027832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.