Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21100 179 / 7e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 147 / 2e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 144 / 4e-43 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 142 / 2e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 142 / 2e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 135 / 1e-39 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT1G22900 130 / 1e-37 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 128 / 4e-37 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 128 / 6e-37 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 122 / 1e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005062 [exp] 311 / 3e-108 AT2G21100 184 / 7e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025065 [exp] 245 / 5e-82 AT2G21100 199 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034478 [exp] 242 / 6e-81 AT2G21100 191 / 1e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 230 / 3e-77 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 229 / 6e-77 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 220 / 5e-72 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 217 / 6e-71 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 209 / 9e-69 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 201 / 1e-65 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131000 [exp] 186 / 1e-59 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 162 / 4e-50 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 160 / 1e-49 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 155 / 2e-47 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G009100 [exp] 154 / 3e-47 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 154 / 4e-47 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 154 / 7e-47 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G023800 [exp] 153 / 8e-47 AT3G13650 171 / 2e-54 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G214600 [exp] 149 / 3e-45 AT2G21100 164 / 6e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 147 / 3e-44 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10027834 pacid=23156873 polypeptide=Lus10027834 locus=Lus10027834.g ID=Lus10027834.BGIv1.0 annot-version=v1.0 ATGTCTCTACTCTATTTGACGGCCGTCCTTCTCATCTCAACGGCGGCGTCAACCGTCGCCAGCAACACCACCACCGGAGTGGACACGGTCACCAACATCG AATTCTACTTCCACGACATCTTGAGCGGGAGCAACCCGACAGCCGTACAAGTCATCAAACCCCTATCCACCTCCTCCAACTTCTTTGGAATGGTCAACGT GGCCGACGACCCGTTGACCGAGACATCCGACCCGAATTCCAAGCTAATCGGGCGGGCCCAGGGGCTATACGCCTCGGTGGGCCAAAACGACATCGCATTG CTGATGGCTCTAAGCTACAACTTTGAAGATGGGCCTTACAAGGGGAGCTCACTCAGCATCATGGGTAAGAACCCGACCATGAAACCGACCAGGGAGCTGC CCGTTTTAGGCGGGACCGGTTTGTTCAGGTTGGCACGTGGGTATGCGTCCCTTAAAACGGTGTCGCTTAACTCTGCGGGGGATGCGGTCGTACATTATAA TGTGACTGTGTACACCCCGGCTAGTAGTGATTCAATCTCCCCGCTTTCTACCCCTGGCGATGGTAGTCGTGCTAGATCTTCGAACGCGGTTGATTCATCA TCTTCTTCGTCCTCGGCGATCAAGGCTACGACAGGAGCATTCGGCTTTGTTTTTGGGTTCATTTTTTTGTTCAATGCTCTGTAA
AA sequence Show only first row Show all	>Lus10027834 pacid=23156873 polypeptide=Lus10027834 locus=Lus10027834.g ID=Lus10027834.BGIv1.0 annot-version=v1.0 MSLLYLTAVLLISTAASTVASNTTTGVDTVTNIEFYFHDILSGSNPTAVQVIKPLSTSSNFFGMVNVADDPLTETSDPNSKLIGRAQGLYASVGQNDIAL LMALSYNFEDGPYKGSSLSIMGKNPTMKPTRELPVLGGTGLFRLARGYASLKTVSLNSAGDAVVHYNVTVYTPASSDSISPLSTPGDGSRARSSNAVDSS SSSSSAIKATTGAFGFVFGFIFLFNAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	2.0	0.9462
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	4.9	0.9276
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	5.9	0.9190
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	9.8	0.9231
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	9.8	0.9336
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	18.8	0.9182
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035901 [exp]	19.2	0.8263
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	20.1	0.9124
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	20.2	0.9006
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	20.4	0.8769

Compare expression of checked genes

Lus10027834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.