Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16640 604 / 0 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 597 / 0 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT4G02510 335 / 3e-95 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT5G20300 289 / 6e-83 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 127 / 5e-32 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 115 / 5e-28 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 90 / 6e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02482 73 / 9e-15 chloroplast outer envelope GTP-binding protein, putative (.1) AT1G33950 49 / 9e-06 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT4G09930 48 / 4e-05 Avirulence induced gene (AIG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005063 [exp] 1546 / 0 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028707 [exp] 308 / 2e-95 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10028706 [exp] 323 / 5e-94 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006048 [exp] 320 / 2e-90 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10043414 [exp] 297 / 3e-87 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 263 / 4e-74 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 262 / 7e-74 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10034170 [exp] 236 / 3e-64 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10004619 [exp] 188 / 4e-53 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131200 [exp] 636 / 0 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 624 / 0 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 543 / 6e-173 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 307 / 2e-86 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 301 / 1e-84 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.006G063500 [exp] 286 / 4e-82 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.008G225000 [exp] 291 / 1e-81 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.018G123300 [exp] 285 / 1e-81 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 128 / 3e-32 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 126 / 9e-32 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family CL0023 [flax] [poplar] PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10027835 pacid=23157093 polypeptide=Lus10027835 locus=Lus10027835.g ID=Lus10027835.BGIv1.0 annot-version=v1.0 ATGGAGAATGAAGCTGAGAGAGTTGTTGTTGATGATGTGCCGGGAGATAAATCCAATGTGGTGAATGGCGTTTTGGAGGAGGCGCTAGAGGAGAGAGTTG CGGCGGCTTCAGACGAGTTGAAGGAGGAGATACTTGTGGAATCTGGTGGATTGAAGGATACTGTGGAAGATGAGGATGAAGAGGGGAAGCATGCTTCGGT CGAGTCCGGGGAAACGAAGGAGGCAGCAGTGGAGGAGAGTGCTGGTGGAGTGAAGGAAACTGTGGAGGAGAATGATGATGGGAAGGGTGACGTGGTCGAG TCCGGTGAATCGAAGGATGTAGAAGAGGAGGTCTTCGAGGAGGCAGTTGATTCACCCGAGAAATTGCAGAGTCCGGTGGTGTCGACTGAGTTGGGAGTTG ATCTTGATGTTGTTAATGATGCTAATGAGGACTTGGGCGTTGGAAGTGAAGTGGAAACATTTGTGGAGCCAGCTGGTGTCCTTTCACAGGATGAGAGTTC AGCTTCCATGGCGGTTGATGATGAGGTGGAATCGTCAATTGGCAGTGAGAACATTGACAAAACTAGTGATGGGGTGACTGGTGAAGAGTCGGGAAAGGAT GGTGTCTCTGAACAGGCTGTGAGTTCAGAGGATTTGGCTTCAATGGCTGGTCAAGATAAGGTGGAAGTTCTGATGGGTGGCGAGAACATTGATAAAACTA GTGATGGGGTAACTGAACAGCTTGTGAGTTTAGAGGATTTGGTTCCAGTGGTTGAGGATAAGGTGGAAGTTCTGTTGGGTGGTGAGAGCATTGACAAAAT TGACGAGGGAGGGACTAGTAAGGAACTGGAAAGCAATGAGCCTGTCGGGGAAACCATTGTTTTCTCTGGGACGTGTGTTAATGGAGGGCATGAGGAGTCG AATGGTGCAGATGTAGTGGCTAGTTCTGACGAAATTATGATTCTGCCTGCAGAAAGTGAGAAGAGGGAGAATGATAATGATCCATCTAAGGAAACCCTGG TTAGAGCAGAGTCTGAGAAGGTTACTATATTGGATGTGGTATGTAGGGATGAAGAATGTGGCGAGCTGAAGCATAACATTGCAATGGCTGATCCTGTGGA AGGAGTCAGTAGCAGTGAGCATCTGGGTGACAATTTGGTTAGGATGGTCGGAAAGCAAGAAGAGAGTAGCAACGGGGAACTGAAATTGACTGCATCCATA GAAAATCTGGAAGAAAGTTGTGAAGTGAAAGATATAGCAGTTGTTCTAGATACACCTGTACCAGAAGTTGTATCTGGTTCAGTTGTTCTAGACTCACCTG TACTGGAAAAAGAAGCTGTTCCTTGTTCAGTTGTTCTTGATACACCCCAGCTGGAAGAAGCAGTCCTACCTGCTTTGGCTGTTTTGGATGCGCCTGCTAA TTTAACTTCCGATAAGGAAGTTATTCAACCCTCATCAAGTACTCCAAGTGCAGCAAACACAGAAGAACTTGTTGAGGAAAAGTCGAATGGTGGTGACATA AAAACTGTTATCGCTGAGGCATTAGGAGAGAAAGTTGAAGCTAAAGAGGCAGAAAACAAAACTGAAGATAAGCGGGAGGTAGAAGACAAAACTGAAGATA AGCGGGAGGTGGAAACTGCTCATTCAAATGGGGTTCATCGAGCTCGTGGAGTTGAGCTTCCACCAAGGGTTGCATCTACCTCTCAAAATTCGACAAGTTC TGTTCCTCCACCTACTCATCCAGCTGGTCTTGGCCGTGCTGCTCCTCTACTGGAACCTGCTCCGAGACCCGTGCAGCAACAGCAACAGCGTGTTAATGGA ACAATGTCCAATGCTCAGTCTCAGCAGATTGACGAGTCGAGTAATGGGGAAGGAGAGGAGTTTGACGAGACTCGTGAAAAACTCCAGATGATCAGGGTGA AGTTTTTGCGGCTTGCACACAGGCTTGGGCAGACACCTCATAACGTTGTGGTTGCTCAGGTTTTATACAGGCTGGGATTAGCCGAACAGCTTCGGGGTAG AAATGGTGGACGTGTTGGTGCCTTCAGTTTTGATCGGGCAAGTGCCATGGCAGAACAGCTCGAGGCAGTTGGGCAGGAACCCCTCGACTTCTCCTGTACA ATTATGGTTATTGGAAAGTCCGGAGTTGGGAAAAGTGCAACTATCAACTCGATATTCGACGAGGTGAAGTTTAACACGGATGCTTTCCAATCTGGCACGA AAAAAGTTCAGGATGTCATCGGCACGGTTCAAGGGATTAAGGTGAGGGTGATCGACACACCGGGGCTTCTACCGTCATGGTCCGAGCAGCGCCACAACGA GAAGATCTTAAACTCTGTCAAGCACTTCATCAGCAAAACACCTCCGGACATTGTGTTGTATCTTGACAGGCTGGACATGCAGACCAGGGATTCCGGCGAC ATGCCTCTATTACGCACCATCACAGATATATTCGGCCCCACGATATGGTTCAACGCGATCGTAGTCCTGACTCACGCCGCATCTGCTCCCCCAGAGGGTC CCAACGGTACTGTGTCGAGTTACGACATGTTTGTCACTCAGCGCTCTCACATAGTCCAGCAGGCTATCCGTCAGGCTGCCGGCGATATGCGGCTGATGAA CCCCGTTTCGTTAGTCAACAACCATTCGGCTTGCAGAACAAATCGAGCCGGGCAGAGAGTGTTGCCCAACGGTCAGGTTTGGAAGCCTCACTTGTTGCTT CTCTCCTTTGCATCCAAGATTCTTGCCGAAGCAAACGCACTGTTGAAATTACAAGATAGTCCTCCTGGGAAGCCTCATGTCATGAAGAAGCAATTGAAAG AAGAGAAAAAGCGAAGGAAGTTGATGAAGAAGATGGCTGCTGCTGCCAAAGATATGCCTGCTGTGTACAGAGATAACGTGGAAGAAGATGAAGCTGGAGG TCCGGCTTCCGTCCCTGTTCCTATGCCCGATCTAGCATTGCCTGCTTCTTTCGATTCGGATAACCCCACTCACCGGTATCGTTCTCTTGATAACTCCAAC CAATGGTTTGTACGTCCTGTTCTCGATTCTCACGGCTGGGATCACGACATTGGTTACGATGGCATTAACGTTGAGAGACTGCTTGTAATCAAGGACAAAT TCCCAGTATCCTTCTCAGGCCAGGTGACAAAGGACAAGAAAGATGCTAATGTCCAGATGGAATTAGCTAGCTCTCTAAAGCACGGATCCGGGAAAGCAAC TTCGATGGGGTTTGATATGCAGACGATGGGAAAAGACTTGGCTTACACTTTACGCGGCGAGACAATGCTGGCGAATTTCAAACGAAACAAAGCTGCTGCC GGGGTGTCGGTTACTCTTCTCGGAGATGCGTTGTCGGCCGGTGCGAAATTCGAAGACAAGCTGGTGGTCAACAAACGGTTCCGGATGGTTGTTTCCGGCG GCGCAATGGCTGGCCGGGGAGATGTAGCTTATGGAGGAAGTTTGGAGGCGCAGTTGAGAGACAAAGACTACCCCTTGGGACGTTCTTTGTCGACTCTCGG GTTATCGGTCATGGATTGGCATGGTGACCTGGCGATAGGATGCAATGTCCAGTCGCAGATTCCGGTTGGAAGGTCGACAAACTTGATTGCTCGTGCGAAT TTGAATAATAGAGGTACGGGGCAGGTGAGCTTGCGGCTGAACAGTTCGGAGCAGCTTCAGATTGCGTTGGTTGGACTCTTGCCTCTGCTGCAGAAGCTGT TCTGGATTCCAAAACAGTCGCAGTATGGACAATGA
AA sequence Show only first row Show all	>Lus10027835 pacid=23157093 polypeptide=Lus10027835 locus=Lus10027835.g ID=Lus10027835.BGIv1.0 annot-version=v1.0 MENEAERVVVDDVPGDKSNVVNGVLEEALEERVAAASDELKEEILVESGGLKDTVEDEDEEGKHASVESGETKEAAVEESAGGVKETVEENDDGKGDVVE SGESKDVEEEVFEEAVDSPEKLQSPVVSTELGVDLDVVNDANEDLGVGSEVETFVEPAGVLSQDESSASMAVDDEVESSIGSENIDKTSDGVTGEESGKD GVSEQAVSSEDLASMAGQDKVEVLMGGENIDKTSDGVTEQLVSLEDLVPVVEDKVEVLLGGESIDKIDEGGTSKELESNEPVGETIVFSGTCVNGGHEES NGADVVASSDEIMILPAESEKRENDNDPSKETLVRAESEKVTILDVVCRDEECGELKHNIAMADPVEGVSSSEHLGDNLVRMVGKQEESSNGELKLTASI ENLEESCEVKDIAVVLDTPVPEVVSGSVVLDSPVLEKEAVPCSVVLDTPQLEEAVLPALAVLDAPANLTSDKEVIQPSSSTPSAANTEELVEEKSNGGDI KTVIAEALGEKVEAKEAENKTEDKREVEDKTEDKREVETAHSNGVHRARGVELPPRVASTSQNSTSSVPPPTHPAGLGRAAPLLEPAPRPVQQQQQRVNG TMSNAQSQQIDESSNGEGEEFDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAVGQEPLDFSCT IMVIGKSGVGKSATINSIFDEVKFNTDAFQSGTKKVQDVIGTVQGIKVRVIDTPGLLPSWSEQRHNEKILNSVKHFISKTPPDIVLYLDRLDMQTRDSGD MPLLRTITDIFGPTIWFNAIVVLTHAASAPPEGPNGTVSSYDMFVTQRSHIVQQAIRQAAGDMRLMNPVSLVNNHSACRTNRAGQRVLPNGQVWKPHLLL LSFASKILAEANALLKLQDSPPGKPHVMKKQLKEEKKRRKLMKKMAAAAKDMPAVYRDNVEEDEAGGPASVPVPMPDLALPASFDSDNPTHRYRSLDNSN QWFVRPVLDSHGWDHDIGYDGINVERLLVIKDKFPVSFSGQVTKDKKDANVQMELASSLKHGSGKATSMGFDMQTMGKDLAYTLRGETMLANFKRNKAAA GVSVTLLGDALSAGAKFEDKLVVNKRFRMVVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQIPVGRSTNLIARAN LNNRGTGQVSLRLNSSEQLQIALVGLLPLLQKLFWIPKQSQYGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	1.0	0.9097
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	3.2	0.8915
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	6.3	0.8727
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	6.7	0.8777
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	8.7	0.8599
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	9.4	0.8264
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	10.8	0.7998
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	11.7	0.8339
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	13.7	0.8391
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	14.7	0.8537

Compare expression of checked genes

Lus10027835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.