Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21090 234 / 3e-74 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G02750 175 / 6e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 172 / 6e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 167 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 166 / 4e-48 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28690 162 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 164 / 3e-47 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40410 162 / 1e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 163 / 2e-46 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G13410 156 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005064 [exp] 357 / 3e-124 AT2G21090 513 / 2e-179 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040577 [exp] 168 / 9e-51 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 169 / 1e-48 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 168 / 4e-48 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 166 / 1e-47 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 165 / 1e-47 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004987 [exp] 162 / 1e-47 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 164 / 7e-47 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014956 [exp] 157 / 1e-46 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027800 [exp] 178 / 4e-52 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 174 / 4e-50 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 170 / 3e-49 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 169 / 2e-48 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G037600 [exp] 165 / 7e-48 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 166 / 1e-47 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 164 / 5e-47 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 164 / 5e-47 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 164 / 5e-47 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G053600 [exp] 162 / 8e-47 AT3G04750 759 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027836 pacid=23156880 polypeptide=Lus10027836 locus=Lus10027836.g ID=Lus10027836.BGIv1.0 annot-version=v1.0 ATGGATGTTAATAATAATAAGAAAGATGTTGTTCTATGGAACACTATGCTTTCCACCTTGGCGCAACACGGTCGTGGGGAGGAGGCTATTCGATTTCTCG ACGAGATGGTTTGTTTTGGGATAGTACCGAACAGGATAACGTTGGTTATCATGCTGAACGCTTGCAGTCATTCGGGGCTAATAGAGGAAGGGGTTAAAGT TTTCGATTCCATGACAGGGAATCATAGCATTGTACCGGATGAGGAGCATTACGCTTGCTTGATCGATCTCCTCGGACGAGCCGGAGTTTTCGAGGGATTA GCGAACCAGCTCCGGATGCTGCCACCAAGTGAGAAGATTTGGAGCGCATTGCTCGGTGTTTGTAGCATCCACGGGAACATGGAGTTGGGGAAAACGGCAG ATGGACAGCTTATGAAGATGCAGCCGAGATCCCCTGCGGCGTATTTATTGCTGTCGAGTGTTTATGGTGCACTTGGGAGATGGGATTTGGTAGAGAAGGT TAGAGAAATCATGGAGAGAAGGGGCATTAGGAAAGAAGAGGGGCTTAGATGGATAGAGAAAGGAACATCCATGACGGCAGAAGAAGAAGAAGAAGCTGTG TGA
AA sequence Show only first row Show all	>Lus10027836 pacid=23156880 polypeptide=Lus10027836 locus=Lus10027836.g ID=Lus10027836.BGIv1.0 annot-version=v1.0 MDVNNNKKDVVLWNTMLSTLAQHGRGEEAIRFLDEMVCFGIVPNRITLVIMLNACSHSGLIEEGVKVFDSMTGNHSIVPDEEHYACLIDLLGRAGVFEGL ANQLRMLPPSEKIWSALLGVCSIHGNMELGKTADGQLMKMQPRSPAAYLLLSSVYGALGRWDLVEKVREIMERRGIRKEEGLRWIEKGTSMTAEEEEEAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10027836 [exp]	0	1
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10019939 [exp]	5.5	0.6061
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10024079 [exp]	7.1	0.5360
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10001853 [exp]	36.0	0.5555
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	49.7	0.5477
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	58.0	0.4682
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10038432 [exp]	97.5	0.4858
AT1G77400			unknown protein		Lus10042737 [exp]	139.0	0.4866
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	141.6	0.4669
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	146.7	0.4538

Compare expression of checked genes

Lus10027836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.