Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34940 544 / 0 ARO1 armadillo repeat only 1 (.1) AT5G66200 450 / 2e-153 ARO2 armadillo repeat only 2 (.1) AT4G36030 422 / 3e-142 ARO3 armadillo repeat only 3 (.1) AT3G26600 199 / 1e-57 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025059 [exp] 653 / 0 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 497 / 4e-178 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10041905 [exp] 370 / 5e-122 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 367 / 7e-121 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10005065 [exp] 300 / 7e-102 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10036897 [exp] 218 / 2e-65 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10034486 [exp] 198 / 1e-62 AT4G34940 163 / 2e-48 armadillo repeat only 1 (.1) Lus10037087 [exp] 183 / 2e-55 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10026695 [exp] 189 / 1e-53 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172500 [exp] 559 / 0 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 540 / 0 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 488 / 4e-168 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.010G045500 [exp] 210 / 1e-61 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 206 / 6e-60 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027837 pacid=23157058 polypeptide=Lus10027837 locus=Lus10027837.g ID=Lus10027837.BGIv1.0 annot-version=v1.0 ATGAAGGTTCAGGCAGTGGTGGCTTGGGCGGTTTCCGAGCTGGCCGCGAACCACCCGAAATGCCAGGACCATTTCGCTCAGGGGAATATAATCCGGTTCT TGGTTAGCCATCTGGCTTTCGAGACGGTTCAGGAGCATAGCAAGTACACGATCGCGAACAATAAGCAGACCTCAATCCACTCGGTTTTGGTCGCGAGCAA CTCGAACGAGTCGGGGAGGGAATCGGAGGAGGATTTGCTGACGGTCTCAAAGATCGCGCACCCAATGAATAACCAGACTACGAGCCAGATGCACAACGTG GTGAATACCACGTTGGGGAGTAGTCATAATGTTAAGACAACCACCACCACTGCTGGTGCTTCGGCACCTACAACGACTGCAGCCGGCAATGCGGCTGTTG TCGTAGGCAAAAAGCCGTCATCTTCGACGTTGTCAACAACGACACATAGTCCTCAAAGGAACAATAATAAAAAACATCATCGGCATCCGAATGGCAAGGA CAAACGTGGGCCCCATCACCATGTCTCGTTATCGGGGACGAGCATCAAGAAGAGGGAGCAAGAGGACCCAGTTACAAAGGCCAACATGAAGGCAATGGCC GCCAGGGCGCTGTGGCAACTAGCGAAGGGGAACGTGATAATATGTCGGAGCATAACCGAGTCTCGAGCGCTACTCTGCTTTGCCATCCTCCTCGAGAAGG GAGAGGAGGAGGTACAATCGTACTCGGCCATGGCGTTGATGGAGATCACCAACGTGGCCGAGCAGCACGCTGACTTGAGGCGGTCAGCTTTCAAGCCCAC CTCCCCGTCGGCAAAAGCCGTGGTGGACCAACTCCTCAAGGTGATCGAGGCAGCCGAGTCCGAATTCCTAGTCCCATGCATCAGGGCAATGGGAAATCTA GCCAGAACGTTTCGAGCCACTGAGACTCGAATCGTGGGGCCCTTGGTCAAACTCCTGGACGAGAAGGAGGCTGATGTGATGATGGAAGCCGCGATCGCCC TGAACAAGTTTGCCTCGACCGAGAACTTCCTCTGTGTGAACCACTCAAAGGCGGTGCTCGCAGGCGGAGGGACCAAGCACTTGATTCAGTTGGTCTACTT TGGGGAACAAGTGATCCAAATCCCTTCCCTAATACTCTTGTGTTACATCACCATGAATTGTCCCGATAGTGATGTCCTAGCCAATGAGGAAGTGTTGATT GTTTTGGAATGGTCAACAAAGCAAGCCCACTTGGTGGAGAACCAAACCATTCAAGAGTTGTTGCCTGAGGCCAAAAGTAGGTTGGAGCTTTATCAATCAA GAGGGTCAAGAGGGTTCCATTGA
AA sequence Show only first row Show all	>Lus10027837 pacid=23157058 polypeptide=Lus10027837 locus=Lus10027837.g ID=Lus10027837.BGIv1.0 annot-version=v1.0 MKVQAVVAWAVSELAANHPKCQDHFAQGNIIRFLVSHLAFETVQEHSKYTIANNKQTSIHSVLVASNSNESGRESEEDLLTVSKIAHPMNNQTTSQMHNV VNTTLGSSHNVKTTTTTAGASAPTTTAAGNAAVVVGKKPSSSTLSTTTHSPQRNNNKKHHRHPNGKDKRGPHHHVSLSGTSIKKREQEDPVTKANMKAMA ARALWQLAKGNVIICRSITESRALLCFAILLEKGEEEVQSYSAMALMEITNVAEQHADLRRSAFKPTSPSAKAVVDQLLKVIEAAESEFLVPCIRAMGNL ARTFRATETRIVGPLVKLLDEKEADVMMEAAIALNKFASTENFLCVNHSKAVLAGGGTKHLIQLVYFGEQVIQIPSLILLCYITMNCPDSDVLANEEVLI VLEWSTKQAHLVENQTIQELLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027837 [exp]	0	1
AT5G59350			unknown protein		Lus10016568 [exp]	5.6	0.9387
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	11.7	0.9289
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	12.5	0.9165
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	18.6	0.9262
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027838 [exp]	18.7	0.8996
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	22.4	0.9246
AT3G52480			unknown protein		Lus10029407 [exp]	24.7	0.9172
AT1G58070			unknown protein		Lus10015482 [exp]	28.0	0.9213
AT3G55420			unknown protein		Lus10005165 [exp]	30.0	0.8957
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	33.8	0.9179

Compare expression of checked genes

Lus10027837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.