Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34940 397 / 6e-136 ARO1 armadillo repeat only 1 (.1) AT5G66200 340 / 1e-113 ARO2 armadillo repeat only 2 (.1) AT4G36030 324 / 2e-107 ARO3 armadillo repeat only 3 (.1) AT3G26600 181 / 4e-53 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027837 [exp] 501 / 9e-180 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10025059 [exp] 464 / 1e-161 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10041905 [exp] 346 / 6e-116 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10028452 [exp] 344 / 4e-115 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10005065 [exp] 299 / 1e-104 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10036897 [exp] 211 / 2e-65 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10034486 [exp] 198 / 4e-65 AT4G34940 163 / 2e-48 armadillo repeat only 1 (.1) Lus10037087 [exp] 177 / 9e-56 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1) Lus10026695 [exp] 168 / 2e-48 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172500 [exp] 417 / 6e-144 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 414 / 8e-143 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.005G113000 [exp] 362 / 2e-122 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.010G045500 [exp] 193 / 8e-58 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 191 / 7e-57 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027838 pacid=23157012 polypeptide=Lus10027838 locus=Lus10027838.g ID=Lus10027838.BGIv1.0 annot-version=v1.0 ATGAAGGCAATGGCCGCCAGGGCGCTGTGGCAACTAGCGAAGGGGAACGTGATAATATGTCGGAGCATAACCGAGTCTCGAGCGCTACTCTGCTTTGCCA TCCTCCTCGAGAAGGGAGAGGAGGAGGTACAATCGTACTCGGCCATGGCGTTGATGGAAAACACCGACGTGGCCGGGCAGCACGCTGACTTGAGGCGGTC AGCTTTCAAGCCCACCTCCCCGTCGGCAAAAGCCGTGGTGGACCAACTCCTCAAGGTGATCGAGGCAGCCGAGTCCGAATTCCTAGTCCCATGCATCAGG GCAATGGGAAATCTAGCCAGGACATTTCGAGCCACAGAGACCCGAATCGTGGGGCCCTTGGTCAAACTCCTGGACGAGAAGGAGGCTGATGTGATGATGG AAGCCGCGATCGCCCTGAACAAGTTTGCCTCGACCGAGAACTTCCTCTGTGTGAACCACTCAAAGGCGGTGCTCGCAGGCGGAGGGACCAAGCACTTGAT TCAGTTGGTCTACTTTGGGGAACAAGTGATCCAAATCCCTTCCCTAATACTCTTGTGTTACATCACCATGAATTGTCCCGATAGTGATGTCCTAGCCAAT GAGGAAGTGTTGATTGTTTTGGAATGGTCAACAAAGCAAGCCCACTTGGTGGAGAACCAAACCATTCAAGAGTTGTTGCCTGAGGCCAAAAGTAGGTTGG AGCTTTATCAATCAAGAGGGTCAAGAGGGTTCCATTGA
AA sequence Show only first row Show all	>Lus10027838 pacid=23157012 polypeptide=Lus10027838 locus=Lus10027838.g ID=Lus10027838.BGIv1.0 annot-version=v1.0 MKAMAARALWQLAKGNVIICRSITESRALLCFAILLEKGEEEVQSYSAMALMENTDVAGQHADLRRSAFKPTSPSAKAVVDQLLKVIEAAESEFLVPCIR AMGNLARTFRATETRIVGPLVKLLDEKEADVMMEAAIALNKFASTENFLCVNHSKAVLAGGGTKHLIQLVYFGEQVIQIPSLILLCYITMNCPDSDVLAN EEVLIVLEWSTKQAHLVENQTIQELLPEAKSRLELYQSRGSRGFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027838 [exp]	0	1
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	14.0	0.9105
AT1G76220			Arabidopsis protein of unknown...		Lus10004999 [exp]	16.9	0.8136
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027837 [exp]	18.7	0.8996
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036460 [exp]	18.8	0.9092
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	19.1	0.9102
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	25.1	0.9083
					Lus10013034 [exp]	34.6	0.8995
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	36.1	0.9015
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	38.1	0.8995
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	39.6	0.9013

Compare expression of checked genes

Lus10027838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.