Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21060 107 / 1e-29 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) AT2G17870 99 / 2e-25 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT4G38680 94 / 1e-24 ATCSP2, CSDP2, GRP2 COLD SHOCK DOMAIN PROTEIN 2, ARABIDOPSIS THALIANA COLD SHOCK PROTEIN 2, glycine rich protein 2 (.1) AT4G36020 93 / 3e-23 CSDP1 cold shock domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005066 [exp] 164 / 2e-52 AT2G17870 122 / 1e-35 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Lus10025058 [exp] 130 / 4e-40 AT2G21060 112 / 6e-33 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10034487 [exp] 101 / 1e-27 AT2G21060 110 / 7e-31 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Lus10028073 [exp] 93 / 5e-24 AT4G36020 115 / 3e-31 cold shock domain protein 1 (.1) Lus10025623 [exp] 80 / 1e-19 ND 81 / 8e-20 Lus10041902 [exp] 71 / 4e-15 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 71 / 5e-15 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132000 [exp] 122 / 3e-35 AT2G21060 103 / 1e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.004G172600 [exp] 121 / 7e-35 AT2G21060 102 / 3e-27 COLD SHOCK DOMAIN PROTEIN 4, glycine-rich protein 2B (.1) Potri.005G174300 [exp] 96 / 3e-25 AT2G17870 92 / 1e-22 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.002G086900 [exp] 92 / 1e-23 AT2G17870 89 / 2e-21 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.005G112800 [exp] 68 / 3e-14 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 64 / 7e-13 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00313 [flax] [poplar] CSD 'Cold-shock' DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027839 pacid=23156874 polypeptide=Lus10027839 locus=Lus10027839.g ID=Lus10027839.BGIv1.0 annot-version=v1.0 ATGAGTGACAGATTATCGGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGCTACGGCTTCATCACTCAGGACGACGGCGGCGAGGATCTCTTCGTTCACC AGTCCTCCATCCGCACCGAAGGCTTCCGCAGCCTAGCCGAGGGAGAAGAGGTCGAGTACCAGATCGAGAACTCCGACGACGGTCGCACCAAGGCCGTCGA TGTCTCCGGGCCCAAAGGAGCTCCTGTTCAGGGCGGATCTGGCGGCGGAGGAGGCGGTAGAGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATACTGCGGGCGGTGGACGTTGATCTCCTTCCGATCAAGTGTGTTTGA
AA sequence Show only first row Show all	>Lus10027839 pacid=23156874 polypeptide=Lus10027839 locus=Lus10027839.g ID=Lus10027839.BGIv1.0 annot-version=v1.0 MSDRLSGKVKWFNDQKGYGFITQDDGGEDLFVHQSSIRTEGFRSLAEGEEVEYQIENSDDGRTKAVDVSGPKGAPVQGGSGGGGGGRGXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILRAVDVDLLPIKCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	0	1
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Lus10005066 [exp]	1.0	0.9477
AT2G15000			unknown protein		Lus10025365 [exp]	1.4	0.9138
AT2G02590			unknown protein		Lus10013278 [exp]	2.2	0.8919
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	3.0	0.9121
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	4.9	0.8860
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	6.0	0.8960
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	6.2	0.8590
AT1G09520			unknown protein		Lus10005290 [exp]	7.1	0.8530
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	7.9	0.8710
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	7.9	0.8787

Compare expression of checked genes

Lus10027839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.