Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17840 449 / 3e-153 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 441 / 5e-150 Senescence/dehydration-associated protein-related (.1) AT3G51250 417 / 9e-141 Senescence/dehydration-associated protein-related (.1) AT4G15450 199 / 7e-58 Senescence/dehydration-associated protein-related (.1) AT3G21600 182 / 1e-51 Senescence/dehydration-associated protein-related (.1.2) AT5G54080 134 / 8e-34 HGO "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2) AT3G21590 76 / 1e-15 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005067 [exp] 628 / 0 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 503 / 1e-174 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 405 / 1e-135 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 325 / 3e-108 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 290 / 8e-93 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 187 / 2e-53 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 186 / 7e-53 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 171 / 7e-48 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10042839 [exp] 171 / 9e-47 AT5G54080 762 / 0.0 "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174100 [exp] 525 / 0 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 496 / 4e-172 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 449 / 3e-153 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 198 / 3e-57 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 168 / 1e-46 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1) Potri.001G374100 [exp] 139 / 2e-35 AT5G54080 741 / 0.0 "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein CL0029 [flax] [poplar] Cupin PF04209 [flax] [poplar] HgmA homogentisate 1,2-dioxygenase
Representative CDS sequence Show only first row Show all	>Lus10027840 pacid=23156917 polypeptide=Lus10027840 locus=Lus10027840.g ID=Lus10027840.BGIv1.0 annot-version=v1.0 ATGGCGAAGGAAGAGACTGTGGTGGTACTTCTCAGTTTATCAAAACGGGTGTGGGTGTTGCAGCAGTTGGATGTTGAAGAATCTTGGTGCAAGCTGTTCA CTATGGAGCTTCTACCGGAGATAATGAATCGTCCGGTGAGGCCTTTGGTTCTGTTGAAGCATGGTAAACTGATATTTGAAGAAATGAAGGACAACATTCT GCAAGTAGTTGATGTCACAACAGCCCTAGGAAAAATTTCTACTCTCCAGCTCCAACAATACTGGACTAATCAAGCACAACTAAACAAAAATGGAGTCTTG GAGTCGGCGGCGGCGGCCCCTCCTCACGAGGAGCTTCTGATTAGAATCCCGGGAGCCATAGTCCACCTGATCGAGAAAGACCGCAGCGTGGAGCTTGCCT GCGGGGATCTGGACATAGTTAGCTTCAAGCAAGGCGATACAGTCGTTGCGGCATTTTGTCGAGTAGGTGGCGACATCCAGTGGCCGCTGGCCAAGGATGA AGCTGCTGTGAAGCTCGATCAATCTCACTACTTCTTCACTCTTCGGGTTCCTTCCGGAAGCCAGGAATTTGGGGATTATGAAGAAGATGAGGCGAACGAT CGATCCGAGGACGAGGAGCTACTAAACTATGGAGTGACCTTTGCTTCGAAAGGGCAAGAGGCACTACTTCACGAATTCGACAAGGTGCTGGAGAACTATA GCGGATTCACGGTGCAGGAAGTGTCCAACAACGAAATCAAGGGATCGGAGATAGTTGATGGGACTGTGGCGAGGGAAACTACGCCGGAGGAGTTCAGCAA AGAAGGGAAGAAGAAGGAGCTGATGAAGGAGAGTTCCACGGCTTATTGGACCGTCCTGGCCCCGAACGTGGAGGACTACAGCAGCTCGTTGGCTAGGATG ATTGCAGCCGGTTCGGGTCACGTTATTAAGGGGATTCTTTGGTGTGGAGATGTCACTGCTGAGAGGTTAAAGTGGGGGAATGATTTCTTCATTAGGAGGA TGAAGAAAGGTGAGTGTGTTGAGATTCATCCTGGCACTCTGAGAAGGATCAAAAGGGTGAAGAAGCTGACGAAAATGTCCGAGAAAGTGGCTCTAGGAAT CTTGACTGGGGTAGTCAAAGTGTCCGGTTTCTTTACGAGTCCGATTGTGAACTCGAAAGTAGGGAAGAAGTTCTTCAGCCTCCTGCCTGGAGAAATCGTC CTTGCTTCCTTGGACGGGTTCAACAAGATTTGCGATGCTGTTGAAGTTGCTGGGAAGAATGTAATGTCCACCTCGTCTGTAGTCACAACTGGACTCGTCT CCCACAAGTACGGAGAACAAGCTGGGAAGGCAACGAACGAAGGGTTCGACGCAGCAGGACACGCGATCGGAACAGCATGGGCAGTGTTCAAGATAAGGAA GGCTTTGAACCCAAAGAGTTCTTTCAAGCCATCAGCTCTGGCCAAGGCAGCAGCCAAGGCGAGCGCTGCTGATCTCAAGGCCAAATCCACCAAGTGTTGG AAGAAAGGTTATTATCATGGATGGAACTTCACCTTGAAACATTTAGCTATGCCCATCAGATTTGCACCCATTTTAGCCAACTTCTGTGGCTGCGTCGCCG ACGACCTCGGTTACCTCTTCGGGTTCGACAACAACTTCGAGTCAGAAGCGATTCTTGGAGCTCTCCCTCGGGGCCAGAACAACCCGCTAGTATGCCCCTG TGGTCTCTACGCGGAGCAGATCTCAGAGACGTGGTTTATAGCTCCCCGCAAGCTCAATCAACTGAGTTGGCTCTATAGGATCAATCATTCGGTGACGCAC GAGCCGTTCCAGCCTCGGATCCCCGTTCACGGGAAGCTCCTAAGCGAGTTCAACTGCTCCAACAACGTCACCACCCCGACTCAGCTCTGA
AA sequence Show only first row Show all	>Lus10027840 pacid=23156917 polypeptide=Lus10027840 locus=Lus10027840.g ID=Lus10027840.BGIv1.0 annot-version=v1.0 MAKEETVVVLLSLSKRVWVLQQLDVEESWCKLFTMELLPEIMNRPVRPLVLLKHGKLIFEEMKDNILQVVDVTTALGKISTLQLQQYWTNQAQLNKNGVL ESAAAAPPHEELLIRIPGAIVHLIEKDRSVELACGDLDIVSFKQGDTVVAAFCRVGGDIQWPLAKDEAAVKLDQSHYFFTLRVPSGSQEFGDYEEDEAND RSEDEELLNYGVTFASKGQEALLHEFDKVLENYSGFTVQEVSNNEIKGSEIVDGTVARETTPEEFSKEGKKKELMKESSTAYWTVLAPNVEDYSSSLARM IAAGSGHVIKGILWCGDVTAERLKWGNDFFIRRMKKGECVEIHPGTLRRIKRVKKLTKMSEKVALGILTGVVKVSGFFTSPIVNSKVGKKFFSLLPGEIV LASLDGFNKICDAVEVAGKNVMSTSSVVTTGLVSHKYGEQAGKATNEGFDAAGHAIGTAWAVFKIRKALNPKSSFKPSALAKAAAKASAADLKAKSTKCW KKGYYHGWNFTLKHLAMPIRFAPILANFCGCVADDLGYLFGFDNNFESEAILGALPRGQNNPLVCPCGLYAEQISETWFIAPRKLNQLSWLYRINHSVTH EPFQPRIPVHGKLLSEFNCSNNVTTPTQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10021856 [exp]	2.8	0.8591
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	5.0	0.8709
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	8.4	0.8119
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	8.8	0.8436
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	9.2	0.8326
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	10.7	0.7877
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	11.4	0.7618
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	11.4	0.8053
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	18.2	0.8204
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	20.6	0.8077

Compare expression of checked genes

Lus10027840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.