Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20990 660 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 648 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 429 / 3e-145 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 299 / 9e-99 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 175 / 4e-48 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 163 / 9e-44 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 137 / 9e-35 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21040 120 / 7e-31 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G53590 60 / 3e-09 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 56 / 6e-08 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005069 [exp] 790 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10019782 [exp] 737 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 735 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10017268 [exp] 699 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 689 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10037993 [exp] 482 / 5e-166 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 458 / 7e-157 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 434 / 2e-147 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 429 / 7e-146 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134200 [exp] 717 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 705 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 698 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 665 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 502 / 4e-174 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 498 / 2e-172 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 182 / 2e-50 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 181 / 4e-50 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 162 / 1e-43 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 119 / 8e-29 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10027842 pacid=23156949 polypeptide=Lus10027842 locus=Lus10027842.g ID=Lus10027842.BGIv1.0 annot-version=v1.0 ATGGGGTTCTTCAGTACGATATTCGGCTTCGTCGGCTTCGGAGTCGGGATTTCGATGAGACTCGTCATCGGATACTTCATCTTCATCTACTCCGCTCCTA CCGACGTCCAGGATCCTGAGGTTCGTCCATTAGCTGAGCAAGACGAAGAGACACTCTCGTGGATGTTCCCTGAGATTCCTCCATGGGTGAAGAATCCTGA CCACGAACGTATTGATTGGCTGAATAAGTTTAAACTCGAATTCTTTGCATGTGAAGGATATCTGCAAGACAGTATAGGACATTGCGAATCCGATAATCGC GGAGCAGATTCTCAGTACAAGATAGAATCAGTGGACTTTGAGACATTAACACTTGGATCACTGCTTCCAACTTTTCAAGGAATGAAAGTGTATGTGATTG ATGAGAAGGAGCTGATAATGGAGCCTTGCATCAAGTGGGCTGCAAATCCTGATGTCACCGTTGCTGTGAAAGCGTTTGGATTGAAAACCACTGCTCAGGT TTTGGACCTGCAAGTTTTTGCTTCCCCTCGCATAACTCTGAAGCCCTTTGTTCCTACTTTCCCTTGCTTTGCCATAATCTACGTGTCTCTCATGGAGAAG CCTCATGTTGACTTTGGACTCAAGCTTGTTGGATTAGATCTCATGTCAATTCCAGGAGTCTACAGACTTGTCCAGATTCTTTCATCGGCGAATTTGTTTA CCTTGCAGGAGATAATTAAAGACCAGGTTGCAAACATGTACCTATGGCCTAAAACTCTGGAGATCCAAGTTCTAGATCCACTAAAAGCCATGAGACGGCC AGTTGGGATTCTAATCGTGAAAGTAGTGAGTGCAATGAAACTGAAGAAGAAAGACCTGCTGGGTGCATCAGACCCGTACGTGAAACTAAAGCTGACTGAG GACAAGGTTCCTTCGAAGAAGACTACAGTAAAGCACAAGAACCTGAACCCAGAGTGGAATGAAGAGTTCAGTATGACGGTTGGCAAACATGACAAGATGG GAATGAACGTGGTTCAACTGAAGGACATCACACCAGAAGAGACCAAAGCAATGACACTTGACTTGGTAAAAACCATGGAATCGAACAATCTTCAGAAAGA TAAATTCAGAGGGCAGATCGTGGTGGAACTGACGTATAAGCCGTTCAAAGAGGAGGACTTGCCGAGCACTTTCGAAGATATGCAGACGGTGGAGAAGCCG GAGGGAACCCCTGCCGGCGGCCGTGTCCTTGTAGTCATTGTTCATGAAGCTCAGGATGTTGAAGGGAAGCACCACACCAATCCTTGCGTGAGGATCACTT TTAAAGGGGAGGAGAGGAGAGGAAGACCAAGGTACCAAATAAAGAAGAGCAGAGACCCAAGGTGGGACGAGGAGTTCCAGTTCATGCTCGAGGAGCCTCC GACAAACGAGAAGCTGCATGTCGAAGTCACGAGCAGCTCGAAACGAATGGGCATGCTTCATCTGAAGGCATGTCTGGGATATGTAGTCATCGGACTTGTA GATGTCCTGAACAACAAGAGAATCAACGAGAAGTACCACCTCATCGACTCGAAGAACGGGAAGCTCCAGCTCGAGTTGCAGTGGCGAGCCGCTCCATAA
AA sequence Show only first row Show all	>Lus10027842 pacid=23156949 polypeptide=Lus10027842 locus=Lus10027842.g ID=Lus10027842.BGIv1.0 annot-version=v1.0 MGFFSTIFGFVGFGVGISMRLVIGYFIFIYSAPTDVQDPEVRPLAEQDEETLSWMFPEIPPWVKNPDHERIDWLNKFKLEFFACEGYLQDSIGHCESDNR GADSQYKIESVDFETLTLGSLLPTFQGMKVYVIDEKELIMEPCIKWAANPDVTVAVKAFGLKTTAQVLDLQVFASPRITLKPFVPTFPCFAIIYVSLMEK PHVDFGLKLVGLDLMSIPGVYRLVQILSSANLFTLQEIIKDQVANMYLWPKTLEIQVLDPLKAMRRPVGILIVKVVSAMKLKKKDLLGASDPYVKLKLTE DKVPSKKTTVKHKNLNPEWNEEFSMTVGKHDKMGMNVVQLKDITPEETKAMTLDLVKTMESNNLQKDKFRGQIVVELTYKPFKEEDLPSTFEDMQTVEKP EGTPAGGRVLVVIVHEAQDVEGKHHTNPCVRITFKGEERRGRPRYQIKKSRDPRWDEEFQFMLEEPPTNEKLHVEVTSSSKRMGMLHLKACLGYVVIGLV DVLNNKRINEKYHLIDSKNGKLQLELQWRAAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10027842 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10026455 [exp]	1.4	0.8695
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	2.0	0.8699
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	8.7	0.8210
					Lus10011314 [exp]	11.8	0.8167
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	12.4	0.8092
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	15.6	0.7590
AT2G32360			Ubiquitin-like superfamily pro...		Lus10027183 [exp]	16.0	0.6202
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	16.1	0.7951
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	16.1	0.7932
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	17.2	0.7932

Compare expression of checked genes

Lus10027842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.