Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35010 948 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G16730 947 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G38590 893 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 754 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 709 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT4G36360 691 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 672 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 668 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 655 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 620 / 0 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005070 [exp] 1286 / 0 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2) Lus10014126 [exp] 1275 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 999 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 989 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 981 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014125 [exp] 838 / 0 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2) Lus10028538 [exp] 730 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 726 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 704 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134400 [exp] 1080 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 1078 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.002G080700 [exp] 760 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 748 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 744 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 696 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 694 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 689 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G144500 [exp] 672 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 669 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10027843 pacid=23156920 polypeptide=Lus10027843 locus=Lus10027843.g ID=Lus10027843.BGIv1.0 annot-version=v1.0 ATGGCGATCATCAACTACACAATAACCCTCTTCGTCGTTTTCTCGACGGCCGCTGTCGTTGCGACGGAGCACGGCGTCCGTTACGACGGCAGGTCGTTGA TCATCAATGGCAAGAGACAACTTCTGTTCTCCGGTTCAATTCACTACCCTCGAAGCACTCCGGACATGTGGCCAGACTTGTTGGCGAAGGCGAAGCGTGG TGGGTTGAACGTGGTTCAGAGTTACGTGTTTTGGAATGTTCATGAGCCGGTTCAAGGGCAGTACAATTTCGAAGGTCGATATGACCTCGTGAAATTCATA CGGAAGATCGGAGAGATGGGAATGTATGCGACCATTCGAGTCGGACCATACGTGGAAGCGGAATGGAATCACGGAGGGTTTCCATTCTGGTTGAGGGAGG TCAAAAACATTACATTTCGTACCGATAATTCTCCTTTCAAGTACCACATGAGGAAATTCGTCAGGATGATAGTGGAAAAGCTGAAAAAGGAGAAGTTGTT TGCGTCACAAGGCGGCCCCATAATCATGTCACAGATTGAGAACGAGTATGCTAATGTCGAACGAGCGTACAAAGGCGCAGGAGCGCGGTATGTACAATGG GCAGGGACAATGGCCGAAAGGCTTAAGACCAGAGTACCATGGACTATGTGCAAACAGATTGATGCTCCTGGTCCTGTGATCAATACTTGCAATGGAAGGC ACTGTGCAAACACATTCCCTGGTCCAAACAAACCCTACAAGCCTTCTCTATGGACAGAGAATTGGACTTCTCACTATACAGTTTTTGGAGGCCCTCCACA CTATAGAAAGCCAGAAGAGATAGCATTCTCAGTTGCTCGATGGTTTGCAAGGAATGGGACTCATGTCAACTATTACATGTACTATGGAGGGACAAACTTG GGGAGGACGACTTCGGCCTTCTCGACAACTCAATATTATGACGAAGCCCCTCTCGACGAATATGGTATGGAGAGGGAGCCCAAAATGGGGCATTTGAGAG ACCTACACAGAGCTTTGAAGCTTAGCCAAAAGGCTCTACTTTGGGGGAACCCTTCTGTTTGGAAGCCTAGTAAGGATGTCGAGGTCTCCGTCTACAATCA ACCAAAGACCGATGTCTGCGCCGCATTCCTGACAAACAACAGCACCGATGTTGCAGCAACGGTCAAGTTGAGGGGACAAAAGTATCACCTGCCGCCATAT TCTGTCAGCATTCTGCCAGATTGCAAAACTGTGGTCTACAACACCATGACAGTTCTGTCGCAGCACAACGCGAGGAGGTTCATGAAATCTAGACTCGCTC ACTGGGACCTGAAATGGGAGATGTACAGAGAAGTGATTCCGAGCCAGCTGGGCCGCGGTTCGAGGAGGCCACTGGAGCTTTATAACTTGACCAAGGATAC AACTGACTATGCTTGGTACACAACCAAGATACAAGTTAGAGAGCAAGATTTGGCTGTGGATGGGAGGCATCTGAAACTTACACTAGAAGTGGCAAGTTTA GGGCATGCAATGGTTGCTTTTGTTAATGGAGAATTTGTTGGAGCTGCTCATGGAAGCCATGATAATAAGAGCTTTGTGCTGAAGGCACCGGTCGAGCTGA AACCCGGGTCGAATTCGGTCACACTGTTGGGCAGCCTAATGGGTCTCCCAAATAGCGGGGCGTATATGGAGCGAAGATATGCAGGGCCTCGCGGAGCTTC GATCGTTGGGATGCGATCCGGACCGATTAAATTGACTTATAATGGTTGGGGACATCAGGTAGGGTTGGATGGGGAGAACGCTCGAATTTACACCGAGGAT GGATCGAGGAAGGTGAAGTGGACGGCGGTTCAGACACGAAGTCGTGCCCTTACATGGTACAAGACATACTTCTATACTCCAGAGCTAAGAGACCCCGTTG CACTCCGAATGATGGGAATGGGGAAAGGAATGGTTTGGATTAATGGGAATAGCATAGGTAGATATTGGATGTCTTACCTTTCTCCCATTGGACAACCTAC CCAATCAGAGTACCACATCCCGCGTTATTTCCTTAAACGGGGAAAGAACCTAATGGTTCTACTGGAAGAGGAGGGATTGAACCCGAAAAGGATTGAAATC TTGATGGTGAACAGAGACATAATATGCAGCGACGTAGCAGAGAACCACTTCCCGACAGTGAATTCGTGGGCAAGGCAGCGTGGCAAGATCGTGGCGGTAG TGGATAAGGTTCGACCAGAGGCTCAGTTAAGATGCCCCTTCCATAAAAAGATCGTCTCAGTAGAGTTTGCTAGCTTCGGAGATCCTCTGGGGGCATGTGG AAGTTATGCCAGAGGAGAATGCAGCTCCCCACAGGCATTGACAAAGTTGGTCTGTCGAAAAGGTTAG
AA sequence Show only first row Show all	>Lus10027843 pacid=23156920 polypeptide=Lus10027843 locus=Lus10027843.g ID=Lus10027843.BGIv1.0 annot-version=v1.0 MAIINYTITLFVVFSTAAVVATEHGVRYDGRSLIINGKRQLLFSGSIHYPRSTPDMWPDLLAKAKRGGLNVVQSYVFWNVHEPVQGQYNFEGRYDLVKFI RKIGEMGMYATIRVGPYVEAEWNHGGFPFWLREVKNITFRTDNSPFKYHMRKFVRMIVEKLKKEKLFASQGGPIIMSQIENEYANVERAYKGAGARYVQW AGTMAERLKTRVPWTMCKQIDAPGPVINTCNGRHCANTFPGPNKPYKPSLWTENWTSHYTVFGGPPHYRKPEEIAFSVARWFARNGTHVNYYMYYGGTNL GRTTSAFSTTQYYDEAPLDEYGMEREPKMGHLRDLHRALKLSQKALLWGNPSVWKPSKDVEVSVYNQPKTDVCAAFLTNNSTDVAATVKLRGQKYHLPPY SVSILPDCKTVVYNTMTVLSQHNARRFMKSRLAHWDLKWEMYREVIPSQLGRGSRRPLELYNLTKDTTDYAWYTTKIQVREQDLAVDGRHLKLTLEVASL GHAMVAFVNGEFVGAAHGSHDNKSFVLKAPVELKPGSNSVTLLGSLMGLPNSGAYMERRYAGPRGASIVGMRSGPIKLTYNGWGHQVGLDGENARIYTED GSRKVKWTAVQTRSRALTWYKTYFYTPELRDPVALRMMGMGKGMVWINGNSIGRYWMSYLSPIGQPTQSEYHIPRYFLKRGKNLMVLLEEEGLNPKRIEI LMVNRDIICSDVAENHFPTVNSWARQRGKIVAVVDKVRPEAQLRCPFHKKIVSVEFASFGDPLGACGSYARGECSSPQALTKLVCRKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	0	1
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	1.0	0.9610
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	4.6	0.8081
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	7.9	0.8237
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	12.2	0.7428
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	14.3	0.6922
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	18.5	0.8080
					Lus10026491 [exp]	22.8	0.6662
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031778 [exp]	23.0	0.8042
					Lus10027053 [exp]	24.0	0.8032
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	27.1	0.7632

Compare expression of checked genes

Lus10027843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.