Plant FIBer expression Database

Lus10027845 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20980 42 / 5e-05 MCM10 minichromosome maintenance 10 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019785
[exp]
91 / 4e-22 AT2G20980 382 / 4e-131 minichromosome maintenance 10 (.1)
Lus10005072
[exp]
83 / 3e-19 AT4G27960 291 / 3e-98 ubiquitin conjugating enzyme 9 (.1.2)
Lus10014124
[exp]
69 / 4e-14 AT2G20980 378 / 1e-129 minichromosome maintenance 10 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G134500
[exp]
83 / 3e-19 AT2G20980 457 / 2e-160 minichromosome maintenance 10 (.1)
PFAM info
Representative CDS sequence
>Lus10027845 pacid=23157051 polypeptide=Lus10027845 locus=Lus10027845.g ID=Lus10027845.BGIv1.0 annot-version=v1.0
ATGGGAGAAAGTGAAGTTAAATCATATATTTTCTGCAGGACTAAATTAGAAAACCGAGGTAGATACATTGCTGATCCTCTTGCTGGCAAGACAGCCTTGA
AAAAGACTGCAAAGTTGGTGTCTTTAGCAGGGCTCAGAAAGACATTGAGCAATGGAGAAAGAGTGACTACAAATACTCACTCTCAGGGATTGAGGTTTCT
AACCGAAATCACTGGAAATTTGGATCTGGAAAGTTCAAGTAAAGATTCTGCAACAGAGAGCTTGAAGAAAAGTAGGAAATCAAAAGGCATGAAAAAGAAA
CCATCTAAGAAGAGCCAAAGAGCTCAACAGGAGGATTCAAAGAGGAGAAGAACTGGTAAGGGGGAAGAAGCTCCTGTGGACAAAGCCAAGCAAAGAACCG
AGAAGATGGTTGAGTTGCAACTGGTCGACTCGGATGATGAATAG
AA sequence
>Lus10027845 pacid=23157051 polypeptide=Lus10027845 locus=Lus10027845.g ID=Lus10027845.BGIv1.0 annot-version=v1.0
MGESEVKSYIFCRTKLENRGRYIADPLAGKTALKKTAKLVSLAGLRKTLSNGERVTTNTHSQGLRFLTEITGNLDLESSSKDSATESLKKSRKSKGMKKK
PSKKSQRAQQEDSKRRRTGKGEEAPVDKAKQRTEKMVELQLVDSDDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20980 MCM10 minichromosome maintenance 10 ... Lus10027845
[exp]
0 1
AT1G68320 MYB BW62C, BW62B, A... myb domain protein 62 (.1) Lus10041435
[exp]
5.3 0.7879
Lus10003757
[exp]
6.7 0.8695
AT3G26040 HXXXD-type acyl-transferase fa... Lus10036927
[exp]
17.3 0.8360
AT5G36000 unknown protein Lus10004013
[exp]
21.4 0.8353
AT1G02335 GL22 germin-like protein subfamily ... Lus10023350
[exp]
24.2 0.8349
AT5G44940 F-box/RNI-like superfamily pro... Lus10000726
[exp]
27.0 0.8348
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Lus10000747
[exp]
30.4 0.8304
AT4G28365 AtENODL3 early nodulin-like protein 3 (... Lus10039852
[exp]
31.6 0.8298
Lus10000586
[exp]
37.6 0.8200
AT5G61850 LFY LFY3, LFY LEAFY 3, floral meristem ident... Lus10016732
[exp]
39.0 0.8132

Lus10027845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.