Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16770 234 / 1e-76 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35040 224 / 8e-73 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 110 / 4e-29 bZIP ATBZIP24 basic leucine zipper 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005073 [exp] 409 / 2e-144 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014121 [exp] 261 / 1e-87 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019788 [exp] 252 / 2e-84 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 100 / 6e-26 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134900 [exp] 265 / 2e-88 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G175200 [exp] 263 / 5e-88 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G204400 [exp] 100 / 4e-25 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G020200 [exp] 88 / 4e-20 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10027847 pacid=23157096 polypeptide=Lus10027847 locus=Lus10027847.g ID=Lus10027847.BGIv1.0 annot-version=v1.0 ATGGAGGACGGCGAGGTGGAATTCTCGAACCAGGAAGTGTTTTCGGCGACGAACATGGCTGAATTCCCTAGCAGCGGATCGATGGACAGCTTCTTCGACG AATTGCTCAAGGACACTCACGCCTGCACCCACACGCACACTTGCAATCCGCCGGGTCCCGATTACTCCCACACTCATACTTGCTTCCACGTCCACACGAA GATAGTCTCGGCTTCGTCCGGCGGGAGCGACGGCGACGACGACGGTACGTCGGAGTCTGCAGGGAAGAAGCTGTCGTCGTCTAAGAAGCGGCCGTTGGGG AACAGGGAGGCGGTGAGGAAGTACAGGGAGAAGAAGAAGGCGAGGGCTGCTTCGTTGGAGGACGAGGTTGTGAAGCTGAGGGCGGTGAACCAGCAGCTGA TGAGGAGGTTGCAAGGGCAGGCTGCATTGGAGGCGGAAGTTGCGAGGTTGAAGTGTTTGCTTGTGGATATTCGGGGGAGGATCGAAGGGGAGATTGGGTC TTTCCCTTATCAGAAACCCGTTGCTGCTGCGGCAGCTGCAAATTTGAACTTGAGTAACATGAATGGGGCGTATGTGATGAATCCTTGTGACATGCAGTGT AATGATCAGGCGTATTGCTTGCATCCTGGGATGGATGGGAGGAGCGGCAGTGGTGGAGATGGTGCCGGGTTGAATGGGAATGGGCAAGTGTATGGTGGTG GTAGTGGTGGTTGTGACTTTGAGAATCTTCAATGCATGATGAATGAGAGCTCCGGGGCCAAGGATTTCTCTGTTTGTGGAGTTGGGAATGGTGTTACGAA TGGGATTTCTCCTGGCTCGAGCAAGAGGAAAGGTTATGATGAATGGCAATGTCCTTATGTTGCAAGGGCGGATCTTTAA
AA sequence Show only first row Show all	>Lus10027847 pacid=23157096 polypeptide=Lus10027847 locus=Lus10027847.g ID=Lus10027847.BGIv1.0 annot-version=v1.0 MEDGEVEFSNQEVFSATNMAEFPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDYSHTHTCFHVHTKIVSASSGGSDGDDDGTSESAGKKLSSSKKRPLG NREAVRKYREKKKARAASLEDEVVKLRAVNQQLMRRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPVAAAAAANLNLSNMNGAYVMNPCDMQC NDQAYCLHPGMDGRSGSGGDGAGLNGNGQVYGGGSGGCDFENLQCMMNESSGAKDFSVCGVGNGVTNGISPGSSKRKGYDEWQCPYVARADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	0	1
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	1.0	0.9317
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	1.7	0.8708
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	2.0	0.8689
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	3.7	0.8839
AT1G64700			unknown protein		Lus10001663 [exp]	6.7	0.8357
AT1G64700			unknown protein		Lus10017341 [exp]	7.7	0.8627
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	8.5	0.8434
AT5G58900	MYB		Homeodomain-like transcription...		Lus10040696 [exp]	9.2	0.8007
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	9.5	0.8074
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	11.3	0.8364

Compare expression of checked genes

Lus10027847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.