Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16800 357 / 3e-122 high-affinity nickel-transport family protein (.1) AT4G35080 322 / 2e-108 high-affinity nickel-transport family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019792 [exp] 404 / 1e-140 AT2G16800 422 / 2e-147 high-affinity nickel-transport family protein (.1) Lus10014116 [exp] 383 / 3e-132 AT2G16800 411 / 4e-143 high-affinity nickel-transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G135600 [exp] 362 / 8e-124 AT2G16800 358 / 3e-122 high-affinity nickel-transport family protein (.1) Potri.004G175700 [exp] 347 / 4e-118 AT2G16800 378 / 2e-130 high-affinity nickel-transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF03824 [flax] [poplar] NicO High-affinity nickel-transport protein
Representative CDS sequence Show only first row Show all	>Lus10027851 pacid=23157005 polypeptide=Lus10027851 locus=Lus10027851.g ID=Lus10027851.BGIv1.0 annot-version=v1.0 ATGGAGAGACTGCTCTACTCTTCTTCGCCGACGTCCTCTCTCAAACCCCACTTCAAATCTGCTCAATCTCCGCCTCGCCTGCTTCGAATCGGAGCAGCAA AACTCCCCGGCGGCGTCTCATTTCTCACACGGCGGCCGGAGGAACTCCGGCGAGTCTGCTCCGTCTCCTACAAGTATGGAATCAACCCACCACAGCCGCC GCCTTCTTTGGTTAAATCTCCGATTAGAGCCGACTCGTCTACCGGGCCGGCGAGAAGTGCCGATCTTTTGGAGCTGCGGATCCCAGCTGAATCGAGCCGT CTGCTGCCAAAGGCAATAACTGTGGCCAAATGTGTACTCCTCTCAGCAATCTTCACCCTATTCTCCCACCGTATTCTTGTACCGTCAGCATCAGCGACCT TACAGACAGCTACCAAGGCCACCGGCACTGTCGGATCCAAGCTACTGCTAAGCAGCGCCTGGACCGGATTCTTTGCCGGCTGCCTCCACACTCTCTCCGG CCCCGACCACCTAGCAGCATTGGCTCCTCTCTCCATAGGCCGAACCCGTCTCGAAAGTGCGGCGGTCGGAGCCCTCTGGGGGTGTGGCCACGATGCCGGT CAAGTGATCTTCGGCCTCCTTTTCTTGCTCCTCAAGGATCAGCTCCATATTGAGATCCTCACCGCTTGGGGAGCTCGGGTCGTTGGCCTTACATTGCTAG TCATCGGAGTCATGGGGATCAAGGAAGCCTTAGAGGCTGGTGAAGCAACAGCATCATTAGAAGATTCATCATTGATGGGGAAGAATTCGACGAAAAAGAA GATAGGGTTTGCGACGTTCGCTACAGGGATCGTGCACGGATTGCAACCGGATGCACTGATGATGGTGTTGCCTGCGCTGGCATTGCCGTCTAGGGTGGCT GGCGCGGCGTTCCTCGTCATGTTCCTCGTTGGCACTGTTGTTGCAATGGGGTCCTACACGGTCTTTATTGGGTCGTGTAGTCAGGCGTTGAAGGACCGGG TGCCTCGGATTACGGAGAAGCTCACTTGGGCGTCTTCCCTAGTGGCGATTGCTCTTGGCTCGTCGATTCTTGTTAGCCAGTTTTTCGGGCTCAACTTGTA CTGA
AA sequence Show only first row Show all	>Lus10027851 pacid=23157005 polypeptide=Lus10027851 locus=Lus10027851.g ID=Lus10027851.BGIv1.0 annot-version=v1.0 MERLLYSSSPTSSLKPHFKSAQSPPRLLRIGAAKLPGGVSFLTRRPEELRRVCSVSYKYGINPPQPPPSLVKSPIRADSSTGPARSADLLELRIPAESSR LLPKAITVAKCVLLSAIFTLFSHRILVPSASATLQTATKATGTVGSKLLLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRLESAAVGALWGCGHDAG QVIFGLLFLLLKDQLHIEILTAWGARVVGLTLLVIGVMGIKEALEAGEATASLEDSSLMGKNSTKKKIGFATFATGIVHGLQPDALMMVLPALALPSRVA GAAFLVMFLVGTVVAMGSYTVFIGSCSQALKDRVPRITEKLTWASSLVAIALGSSILVSQFFGLNLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16800			high-affinity nickel-transport...		Lus10027851 [exp]	0	1
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	3.6	0.9157
AT5G57460			unknown protein		Lus10007487 [exp]	5.5	0.8701
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	6.3	0.9061
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	6.6	0.9088
AT5G08570			Pyruvate kinase family protein...		Lus10017364 [exp]	10.2	0.8543
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	12.7	0.9023
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	13.0	0.9068
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10003374 [exp]	13.7	0.8984
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	15.7	0.8852
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	20.5	0.8922

Compare expression of checked genes

Lus10027851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.