Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 489 / 6e-170 Amidase family protein (.1) AT3G25660 125 / 2e-30 Amidase family protein (.1) AT5G07360 110 / 2e-25 Amidase family protein (.1.2) AT5G64440 63 / 4e-10 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 55 / 7e-08 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 52 / 1e-06 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 43 / 0.0006 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027853 [exp] 935 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10025066 [exp] 528 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002805 [exp] 498 / 2e-174 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10034477 [exp] 180 / 2e-51 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10007361 [exp] 121 / 4e-29 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 120 / 2e-28 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10027854 [exp] 97 / 2e-24 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10032519 [exp] 107 / 3e-24 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 104 / 2e-23 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169300 [exp] 693 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 666 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.009G130500 [exp] 607 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 558 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 555 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 542 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 459 / 2e-159 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.018G086350 [exp] 120 / 9e-29 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.015G109400 [exp] 112 / 6e-26 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.005G070300 [exp] 101 / 2e-22 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10027852 pacid=23157100 polypeptide=Lus10027852 locus=Lus10027852.g ID=Lus10027852.BGIv1.0 annot-version=v1.0 ATGGCGAACAACGGCGGACCAATAGCTCAGCTCCTCCTCCTCCTATCCGCCGCATTCTTCACCGTCACGGCCACGCATTTCCCATTCGAGGAAGCCACCG TCGACCAGATCCAGCTCGCCTTCGCCGACAACACTCTAACTTCCAAACAGCTGGTCAACTTCTACCTGGACCGAATCAACGACCTCAACCCCTACCTCCG CGGCGTACTGGAGCTGAATCCGGACGCGATTCGCCAAGCCGAGGAGGCCGATTCAGCAAGATCAAAGTCGGGTCGGAAGTTAGGGGATCTGCACGGGGTT CCTGTTCTGTTAAAGGACGGGATAGCGACGAAGGATCTGATGAACACGACGTGTGGATCGTACGCGCTGCTGGGATCGACGGCCGTACGTGACGCCGGAG TAGTGAAGCGGCTCCGGGAAGCCGGCGCCGTCATCTTGGGGAAGGCCAGCCAGAGCGAGTGGTACCACGTCAGGTCTTTCGGGATTCCCAACGGGTGGTC CGCTAGAGGCGGGCAATCTGTGAATCCATACGTGGAAGGAGGAGATCCGTGCGGGTCGAGCAGCGGGTCAGCAATCTCGGTAGCTGCAAACATGGTGGCT GTGTCACTAGGGACCGAGACGGACGGTTCGATTCTCTGCCCGGCTGATCACAACTCAGTTGTCGGGTTCAAACCGACAGTCGGCCTAACCAGCCGGGCTG GAGTGATTCCTGTCTCCCTTCGCCAGGACACGATCGGGCCGATATGCAGGACAGTGTCGGATGCTGTCTACGTGCTCGAGGCAATCGTGGGGTTCGACCC TCGGGACGGAGTAGCAACAAGAGAGGCATCAAAGTTCATACCATCCGGTGGATACAAACAGTTTCTGAAAAGAAACGGCTTGAAGGGGAAAAGACTAGGC ATTGTAAGAACTCCATTCTTAGATAAGGTCAATGACTCAACCATTTTAACTACCTTCAACCGCCACTTGCAAGTGTTCGTTCAACAAGGTGCAACTGTTA TAGACAATGTCGAGTTAGCCAAGGTGGAATTTGTACTCAACCCGTTTCAATCCGGAGAAATGGCAGTAATGATGGCCGAGTTTAAGGTTGCGATTAATCG TTACCTCGAAGAAGACCTAGTCGAATCGCCAGTGAGGTCGCTGGCTGACATCCTCGCTTTCAACGTCAATAACCCGAAACTGGAGAAAATGGAGGAGTTC GGGCAAGAACTTATGGCGGCAGCACAGATGACGAACGGGATAGGGAAGAACGAAACGGAGGCGATTCAGGTCATGGACAGTCTGTCACAAGAAGGGTTTG AAGCAGCAATGAAAACGCACGAGCTGGACGCACTGGTCACGATAGGCTCGGATGTCTCGTCGGTGCTAGCCATTGGTGGGTACCCTGGGATTTCCGTCCC CGCTGGGTACGGTTCCGAAGGGAAGCCGTTCGGGATCGTCTTCGGAGGGTTGAAAGGCACCGAGCCTAAGCTCATCGAGGCTGCTTACTCGTTCGAGCAA GCAACGAAAGCACGTAAGACCCCTCCTCCGTACGTCTCCTCCTCCTTCCCATTGAACTCAAAGATGTATTGTTCTGCTTCGAGTTTTCCAGTTTAA
AA sequence Show only first row Show all	>Lus10027852 pacid=23157100 polypeptide=Lus10027852 locus=Lus10027852.g ID=Lus10027852.BGIv1.0 annot-version=v1.0 MANNGGPIAQLLLLLSAAFFTVTATHFPFEEATVDQIQLAFADNTLTSKQLVNFYLDRINDLNPYLRGVLELNPDAIRQAEEADSARSKSGRKLGDLHGV PVLLKDGIATKDLMNTTCGSYALLGSTAVRDAGVVKRLREAGAVILGKASQSEWYHVRSFGIPNGWSARGGQSVNPYVEGGDPCGSSSGSAISVAANMVA VSLGTETDGSILCPADHNSVVGFKPTVGLTSRAGVIPVSLRQDTIGPICRTVSDAVYVLEAIVGFDPRDGVATREASKFIPSGGYKQFLKRNGLKGKRLG IVRTPFLDKVNDSTILTTFNRHLQVFVQQGATVIDNVELAKVEFVLNPFQSGEMAVMMAEFKVAINRYLEEDLVESPVRSLADILAFNVNNPKLEKMEEF GQELMAAAQMTNGIGKNETEAIQVMDSLSQEGFEAAMKTHELDALVTIGSDVSSVLAIGGYPGISVPAGYGSEGKPFGIVFGGLKGTEPKLIEAAYSFEQ ATKARKTPPPYVSSSFPLNSKMYCSASSFPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34880			Amidase family protein (.1)		Lus10027852 [exp]	0	1
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	11.8	0.8221
AT1G09280			unknown protein		Lus10008045 [exp]	12.7	0.8097
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	13.4	0.8336
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	13.9	0.8576
AT3G59650			mitochondrial ribosomal protei...		Lus10010559 [exp]	16.2	0.8221
AT2G43590			Chitinase family protein (.1)		Lus10010861 [exp]	17.6	0.8464
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	28.0	0.8196
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	32.7	0.8230
AT5G26800			unknown protein		Lus10011180 [exp]	49.7	0.8164
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010698 [exp]	53.4	0.7693

Compare expression of checked genes

Lus10027852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.